Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1272 ATGAGTGGCCGATTTTCTCGCACAATCTATGTTGGCAATCTGCCTTCGGATATAAGAGAATATGAAATTGAAGATCTATTCTACAAGTATGGTCGCATATTGGACGTTGAGTTGAAGATCCCACCTCGTCCCCCTTGTTATTGTTTTGTGGAGTTTGAGAATTCTCGGGATGCGGAAGATGCAATTAGGGGTCGTGATGGCTATAATTTTGATGGTTGTCGTCTGAGGGTTGAACTTGCCCATGGTGGTAGAGGGCAATCATCTTCAAGCGATCGTCGTGGTGGCCATGGTAGCGGGGGTGGGGGCCGCTTTGGTGTTTCACGCCATTCTGAGTATCGAGTTATTGTTCGTGGGCTTCCAAGTTCTGCTTCCTGGCAAGATTTAAAGGATCACATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGATGCTGATGGAACCTTTGGTCTTGTTGATTATACCAATCATGAAGACATGAAATACGCTATTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGGGCTTATATTCGGGTGAAGAGGTATGATGTCAGTCCAAGAAGCCGAAGCCGAAGCCATAGTCCCAGTAGAAGCAGGAGCCTAAAAAGGAACCGGAGCAAATCATTGGAACGATCTGTATCAAGATCAGCTTCAAAATCTAGATCTCCATCTCCTGTCAGGCGATCAAGGTCCAGATCAGCATCTCCCCGTCCGGCCAGATCAGGTAGCGCCTGA 753 0.4675 MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAEDAIRGRDGYNFDGCRLRVELAHGGRGQSSSSDRRGGHGSGGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDADGTFGLVDYTNHEDMKYAIRKLDDTEFRNPWARAYIRVKRYDVSPRSRSRSHSPSRSRSLKRNRSKSLERSVSRSASKSRSPSPVRRSRSRSASPRPARSGSA* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1272 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Vvi16g1272 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vvi16g1272 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Vvi16g1272 250 SUPERFAMILY RNA-binding domain, RBD 6 180 IPR035979 GO:0003676
Vvi16g1272 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vvi16g1272 250 Gene3D - 112 189 IPR012677 -
Vvi16g1272 250 Gene3D - 2 111 IPR012677 -
Vvi16g1272 250 MobiDBLite consensus disorder prediction 221 250 - -
Vvi16g1272 250 FunFam serine/arginine-rich splicing factor SR34A-like 112 189 - -
Vvi16g1272 250 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 249 - -
Vvi16g1272 250 MobiDBLite consensus disorder prediction 81 106 - -
Vvi16g1272 250 MobiDBLite consensus disorder prediction 189 250 - -
Vvi16g1272 250 SMART rrm1_1 113 182 IPR000504 GO:0003723
Vvi16g1272 250 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vvi16g1272 250 FunFam serine/arginine-rich splicing factor SR34A-like 2 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1272 Vvi-Chr16 21298093 21301537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1272 4 170 Eukaryotic Initiation Factors Gene Family AT4G34110 25.862 1.73e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1272 K12890 - vvi:100853709 370.163