Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1271 ATGTCGATCGGCGAGATAGCTTGCACTTACGCCACTCTCATCCTCCATGATGACGGAATCTCAGTCACACCGGAGAAGATCAATACTTTGGTGAAAGCTGCGAAGGTGGAGGTTGAGTCTTACTGGCCGGCTCTATTCGCTAAGCTAGTCGAGAAGAGAAACGTTGAAGATCTCATTGCCAACGTTGGTTCCGGTGGAGGCGGTGCTCCCGTCTCTGCTGCCGCTCCAGCTGCTGGTGGTGCTTCGGCTGCTGCCGCCGCTCCTGTAGTTGAGGAGAAGAAGGAAGAACCAAAGGAAGAAAGTGACGACGACATGGGATTCAGCTTGTTTGACTAG 336 0.5327 MSIGEIACTYATLILHDDGISVTPEKINTLVKAAKVEVESYWPALFAKLVEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKEEPKEESDDDMGFSLFD* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1271 111 Hamap 50S ribosomal protein L12 [rpl12]. 6 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vvi16g1271 111 MobiDBLite consensus disorder prediction 89 105 - -
Vvi16g1271 111 Gene3D - 1 63 IPR038716 -
Vvi16g1271 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 111 - -
Vvi16g1271 111 MobiDBLite consensus disorder prediction 85 111 - -
Vvi16g1271 111 FunFam 60S acidic ribosomal protein P1 1 63 - -
Vvi16g1271 111 CDD Ribosomal_P1 5 110 - -
Vvi16g1271 111 Pfam 60s Acidic ribosomal protein 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1271 Vvi-Chr16 21294900 21295835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1271 1 111 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 58.621 9.54e-41 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1271 K02942 - vvi:109124269 151.754