Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1267 ATGGCCGCTCTACTCTCTTTGCTTCCGAATCCATTCTCTTCTTCTTCTTCTTCATCTTCTCCGTCGCTCCCTTCGGTACCCATCAATACTCCGGCAACACCTCAGTTCTCAGTTGCTTTATCTGCAACTAGTCATCTTCATAATTGGGTTTCTGTGATCAATGCTAGTATAACCAGAACCAGTCAACTGAAGACGCTGTTGCTGCCCAAATGCTTCGCCATTAACAGCACCATCTCCTCCTCCGATGTCTTCAATGACACGGGATCACTCTTCTCGCTCTTCCAAGGACTTGGAGTCGATGAAAGGGAGGTGGAATTACTTTTAAACAAGAACCCGGCTCTCCGGCTTGCGTCTTTTGATTGTGTACATGAACGGGTTTGTTCTTTAGAGTCACTTGGAATCAATGGGGTTGCGCTGTATAGCTTGATTACCAAATGTCCAGATGTGTTAACTGCTCCTGAAATTGATCCATTAATTAGTTTCATTCGGGACGATTTAGAGGGGAAGATAGAGCCCGCCCAGATTTGCCGTCTTTTGAAGGCCGCAGAACCAAGATTCTTGGTGGGTTTTGATGGGAAGGTTAGACTGCTCGTTCATCATGGAATCCCCCAGGAGAGGATTGCTCATGTTCTCAACAATGTTAATTTAACCAGGGCAATATGCCTTAAGTCAGCTGAAGAAATTGAAAAAACATTCACCTTCTTGAGTCGTTTTGGCGCTGTTGATATAATCATTAAGCGCCCGGCAATTCTCAATTATGACTTGGAGAGTCAACTGATTCCTAGGGTTAGGGTTCTTGTAGAGCTCAGTGGGGGAGATGATGCTGCCACAGGAGTGGTTTTGCGTAAGCTCCCGGCAATTTTGAGATATAGTGAGGAGCATTTGGGTGGTCATGTGGAGTTCTTGAGGTCATTTGCCGGTCTTAGTGACCAGGAAATTTTCAAGATTGTATGTGTGTTCCCTAATGTTTTCAGTGCAAGCAAGGAGAGGAAATTGAATCCCAGGATTGATTTTCTCAAGCAATGTGGGTTGAATTCCTATGATATCTTCAGGTTCTTGATAAAAGCGCCTCTGTTTCTAGGGTTGTCCTTTGAAGAGAACCTCGTGCACAAACTCAGTTTATTGGTGAAGATCGGATATCAATATAGGACAAGGGAATTGGCCATCGCCATGGGAGCTGTGACAAGAACAAGCTGCGAGAATTTACAGAAGGTGATTGGGCTATTTTTGAGTTATGGATTATCTTGTGAGGACATTGTTGCCATGAGCAATAAGCATCCCCAGATACTACAATACAATCCCACTTCTTTGAAGGAGAAGATTGAATACTTGATTGAGGACATGGGTCGTGAAGTTGATGAGCTGTTGGCTTTTCCTGCGTTTCTCGGTTACAAACTTGATGACAGAATCAAGCATAGGTATGAAGTAAAGAAGAAGATTATAGGAGAAGGAATGTCTCTCAACAAGCTTTTGAGTGTGTCTACAGAGAGATTCTCAAGGAGGAAGAAGAAGGATCCAGCACATACAACTGAGAATCCGAGTGGAAGTAAAGTTTCTGTGCTCTTGATTCTACATGACCAGGTGTTCTTCCCTGCTGCTGTTGATGCCAAAAGCAATGTTTATATAGTCTATATGGGAGAAAGGCAACATGGCAACCTAGATCTTATAACGGATGGTCATCACAGAATGCTCTCTGAAGTCCTTGGAAGCGATGAAGCATCAGTTGAATCCATGGTCTACAGCTATAAACATGGCTTCTCTGGGTTCGCAGCCAAACTGACGGAGGCTCAAGCGCAAATGTTTGCAGAGTTACCAGATGTTGTTCAAGTCATACCCAATCGTTTACATAAGCTGCAAACAACGAGAAGCTGGGATTATCTTGGACTCCCTTTGGATTCACCAACCAGTCTTCTGCATGAAACCAAGATGGGTGATGGCACCATCATTGGCCTTCTTGATACGGGAATATGGCCAGAATCAGAAGTTTTCAGTGAGAAAGGTCTAGGGCCCATCCCCTCTCGATGGAATGGTGTTTGTGAATCGGGAGAGCTCTTCCACGGAGCAAAAGCCTGTAATAGAAAACTAATTGGAGCTCGTTATTTAATTAAGGGACTTGAAGCTGAGATTGGACAGCCATTCAACACCACTGAAAACCCCGACTACTTGTCCCCCAGAGACTGGCTTGGACATGTGAGGGGTGGTGCACCCCGGGCCAGGCTGGCAATGTACAAAGTGTGCTGGAATTTATATGGTGGTGTATGTGCAGATGCTGATATATTCAAGGGCATTGATGAAGCCATACATGATGGGGTTGATGTATTATCACTGTCCATCAGCTCAGATATTCCCTTGTTTTCCCATGTTGACCAGCATGATGGGATTTCCATAGCTTCATTCCATGCTGTGGTGAGGGGGATCCCTGTTGTTAGTGCAGCAGGTAATAGCGGTCCAAGTGCTGAAACAGTATCAAACACAGCACCATGGATTATAACTGTTGCAGCTAGCACCATGGATAGATTGTTTGCCACCCATATAACACTTGGAAACAACCAGACCATAACAGGTGAAGCTGTGTATTTAGGTAAGGATACAGGGTTCACCAACTTGGCGTATCCAGAAGTCTCAGACCTCCTAGCTCCACGCTATTGTGAATCTCTCTTGCCAAACGACACTTTTGCAGCTGGAAATGTGGTGCTTTGCTTCACTTCAGATTCCAGTCACATTGCTGCAGAGTCTGTCAAAAAGGCTGGTGGTCTGGGGGTGATTGTTGCCAGTAACGTAAAAAATGACCTGAGTTCATGCAGCCAAAACTTCCCATGTATCCAAGTAAGCAATGAAATTGGAGCCAGGATTCTTGACTACATTCGCTCTACCAGGCATCCCCAAGTGAGGCTAAGCCCTTCCAGAACACATCTGGGCAACCCTGTGCCAACCAAAGTGGCATCCTTCTCATCTAGAGGACCTAGCTCCATTGCCCCGGCAATACTCAAGCCAGATATAGCAGGCCCCGGGTTCCAAATATTGGGAGCAGAACCTTCTTTTGTTCCAACGAGTACAAAATATTATCTCATGTCAGGAACATCAATGGCAACCCCTCATGTATCTGGGGCAGTTGCCCTGCTCAGGGCACTGAACAGGGAATGGTCCCCAGCAGCTATAAAATCGGCAATTGTCACAACAGCATGGACAACTGACCCTTCTGGAGAACCGGTTTTTGCCGAGGGACAGCCAATGAAGCTTGCTGATCCATTTGATTTTGGAGGTGGAATTCTGAACCCCAATGGTGCAGGAAACCCCGGTCTGGTGTATGATATGGGCAAAGACGATTGCATTCTGTACCTCTGCGCTATGGGTTACAACAACTCTGCTATTGCTAAGGTCACTGGACGACCCACATCATGCCCCTGCAACCGACCTTCAATTCTGGACGTAAACCTTCCTTCCATAACCATCCCAAACCTCCAATACTCGGTCTCTCTCACCAGAAGTGTCACAAATGTTGGAGCTGTTGACTCAGAGTACAACGCTGTTATCGACCCTCCACCAGGAGTCACCATAAAGTTAGAACCTGATAGGCTCGTCTTCAACTCCAAAATCAGAACCATCACTTTCAGAGTCATGGTTTCCTCAGCTCGCCGAGTGAGCACGGGATTCTCTTTCGGAAGCTTGGCTTGGTCTGATGGAGAGCATGCTGTAAGAATTCCCATATCAGTTAGAACACACACAATGAGTTCGCTCCATCATGGAAGTCTCATGCTAATTTTCTTAGCTTCTTCCATCTTGATTCTAAACGAGAAAGTTAGCTCGGTATCTCCGGCACAAGCCAAAAGCAAGGTCCACATCGTTTATTTGGGAAAGAGGCAGCACCATGATCCAGAATTCATCACCAACACTCATCATGAAATGCTCACTACAGTTCTTGGAAGCAAAGAAGCATCTGTAGATTCCATGCTCTACAGTTACAGACATGGCTTCTCTGGATTTGCAGCCAAGTTGACAGAAGCTCAAGCACAAGCAGTTTCAGAGTTACCTGATGTGGTTCAAGTCATGCCCTCCCGCCTTCATAAGCTGAAGACAACAAGGAGCTGGGATTACCTTGGCCTCTCCTCTTCACACTCTTCCACCAATCTCCTGCATGAAACCAACATGGGTGATGGAATCATCATTGGTCTTCTTGACTCAGGGATCTGGCCTGAATCAAAAGTTTTCAGCGATAAAGGTCTGGGGCCAATCCCGTCTAGATGGAAAGGTGGCTGCAGCTCAGGGCAGAGCTTCAATGCAACAAAGCACTGCAACAGAAAACTTATTGGAGCTCGTTATTTCTTAAAGGGACTTGAAGCAGAGATTGGAGAGCCATTGAATACCACTAAATACCTAGAATACTTGTCCCCGAGAGACGCACTTGGACATGGTACACATACATCTTCTATTGCTGGTGGTTCTCCTGTGGTCAATGCCAGCTACTATGGGCTTGGTTTTGGAACAGTGAGGGGTGGCGCACCTGGGGCTCGGCTGGCCATGTATAAAGCGTGCTGGAATTTGGGCGGGGGATTCTGCTCAGATGCTGATATACTGAAAGCTTTTGACAAAGCCATCCACGACGGAGTAGATGTGTTATCAGTCTCACTCGGTTCCGACGACATCCTGTTCACTGAAATTATCAAACCTGATAGCATCCTCATTGGTTCATTCCATGCTGTGGCACAGGGGATTTCGGTTGTTTGTGCAGCAGGAAATGGGGGCCCAAGTGCTCAAACAGTAGAGAATACAGCACCGTGGATATTAACTGTAGCAGCTAGCAGCATTGATCGGTCCTTCCCTACACCCATCACACTAGGCAACAACCGCACCGTCATGGGTCAAGCCATGCTCATTGGAAACCATACAGGCTTCGCCAGCTTAGTGTACCCAGATGACCCACATCTCCAGAGTCCTAGCAATTGTCTATCTATATCACCGAATGACACTTCAGTGGCTGGAAAAGTGGCGCTCTGCTTCACTTCAGGTACAGTTGAGACAGAATTTTCTGCATCTTTCGTGAAAGCAGCTCTTGGCCTGGGGGTAATTATTGCTGAGAATTCTGGAAACACCCAGGCATCATGCATCAGTGACTTCCCATGTATTAAAGTAAGCTACGAAACTGGAAGCCAGATACTCCACTACATCAGTTCGACCAGGTACCATTATCAAAATTATCACAAAAAATATCATCATCATCATCATCACCATCATTATCCTCATATGGCTTTGTTGTTGAGAGGCTTTTGCAGGCATCCCCATGTAAGGCTGAGCCCTTCTAAAACACATGTTGGGAAACCCGTGCCAACCAATGTGGCCTACTTCTCATCTCGAGGGCCAAGTTTCCCCAGTCCAGCAGTATTGAAGCCAGATATAGCAGGTCCAGGTGCCCAAATACTTGGGGCAGTTCCACCTTCTGATCTGAAAAAGAACACCGAATTTGCTTTCCATTCTGGAACATCCATGGCAACTCCTCATATTGCAGGCATTGTTGCACTACTCAAATCCCTGCACCCACATTGGTCCCCAGCTGCAATTAAATCAGCAATTGTCACAACAGGATGGACAACTGATCCGTCTGGAGAACCAATCTTTGCCGAGGGAGATCCAACAAAGCTCGCTGATCCATTTGATTTTGGAGGCGGAATTGTGAATCCGAATAGAGCAGCGGATCCTGGTCTAGTTTATGACATGGGTACAGCGGATTATATTCATTATCTCTGTACCTTGGGCTACAACAACTCTGCCATTTTTCAGTTCACAGAACAATCCATACGCTGCCCCACTCGAGAGCATTCTATTCTTGACTTGAATCTTCCTTCCATAACCATCCCAAGCCTCCAAAATTCAACCTCCCTCACCAGAAATGTCACAAATGTTGGAGCTGTCAACTCCACGTACAAAGCCTCTATCATATCCCCAGCAGGCACAACCATAACAGTAAAACCTGATACTTTGATTTTTGACTCTACCATCAAAACTGTTACCTTCAGTGTCACAGTTTCCTCAATTCAACAGGTGAACACAGGATACTCTTTTGGGAGCTTGACTTGGATTGATGGGGTGCATGCAGTGAGAAGCCCCATATCTGTGAGAACTATGATCAAAGAATCTTATGCTAATGACAGCTAA 6150 0.4597 MAALLSLLPNPFSSSSSSSSPSLPSVPINTPATPQFSVALSATSHLHNWVSVINASITRTSQLKTLLLPKCFAINSTISSSDVFNDTGSLFSLFQGLGVDEREVELLLNKNPALRLASFDCVHERVCSLESLGINGVALYSLITKCPDVLTAPEIDPLISFIRDDLEGKIEPAQICRLLKAAEPRFLVGFDGKVRLLVHHGIPQERIAHVLNNVNLTRAICLKSAEEIEKTFTFLSRFGAVDIIIKRPAILNYDLESQLIPRVRVLVELSGGDDAATGVVLRKLPAILRYSEEHLGGHVEFLRSFAGLSDQEIFKIVCVFPNVFSASKERKLNPRIDFLKQCGLNSYDIFRFLIKAPLFLGLSFEENLVHKLSLLVKIGYQYRTRELAIAMGAVTRTSCENLQKVIGLFLSYGLSCEDIVAMSNKHPQILQYNPTSLKEKIEYLIEDMGREVDELLAFPAFLGYKLDDRIKHRYEVKKKIIGEGMSLNKLLSVSTERFSRRKKKDPAHTTENPSGSKVSVLLILHDQVFFPAAVDAKSNVYIVYMGERQHGNLDLITDGHHRMLSEVLGSDEASVESMVYSYKHGFSGFAAKLTEAQAQMFAELPDVVQVIPNRLHKLQTTRSWDYLGLPLDSPTSLLHETKMGDGTIIGLLDTGIWPESEVFSEKGLGPIPSRWNGVCESGELFHGAKACNRKLIGARYLIKGLEAEIGQPFNTTENPDYLSPRDWLGHVRGGAPRARLAMYKVCWNLYGGVCADADIFKGIDEAIHDGVDVLSLSISSDIPLFSHVDQHDGISIASFHAVVRGIPVVSAAGNSGPSAETVSNTAPWIITVAASTMDRLFATHITLGNNQTITGEAVYLGKDTGFTNLAYPEVSDLLAPRYCESLLPNDTFAAGNVVLCFTSDSSHIAAESVKKAGGLGVIVASNVKNDLSSCSQNFPCIQVSNEIGARILDYIRSTRHPQVRLSPSRTHLGNPVPTKVASFSSRGPSSIAPAILKPDIAGPGFQILGAEPSFVPTSTKYYLMSGTSMATPHVSGAVALLRALNREWSPAAIKSAIVTTAWTTDPSGEPVFAEGQPMKLADPFDFGGGILNPNGAGNPGLVYDMGKDDCILYLCAMGYNNSAIAKVTGRPTSCPCNRPSILDVNLPSITIPNLQYSVSLTRSVTNVGAVDSEYNAVIDPPPGVTIKLEPDRLVFNSKIRTITFRVMVSSARRVSTGFSFGSLAWSDGEHAVRIPISVRTHTMSSLHHGSLMLIFLASSILILNEKVSSVSPAQAKSKVHIVYLGKRQHHDPEFITNTHHEMLTTVLGSKEASVDSMLYSYRHGFSGFAAKLTEAQAQAVSELPDVVQVMPSRLHKLKTTRSWDYLGLSSSHSSTNLLHETNMGDGIIIGLLDSGIWPESKVFSDKGLGPIPSRWKGGCSSGQSFNATKHCNRKLIGARYFLKGLEAEIGEPLNTTKYLEYLSPRDALGHGTHTSSIAGGSPVVNASYYGLGFGTVRGGAPGARLAMYKACWNLGGGFCSDADILKAFDKAIHDGVDVLSVSLGSDDILFTEIIKPDSILIGSFHAVAQGISVVCAAGNGGPSAQTVENTAPWILTVAASSIDRSFPTPITLGNNRTVMGQAMLIGNHTGFASLVYPDDPHLQSPSNCLSISPNDTSVAGKVALCFTSGTVETEFSASFVKAALGLGVIIAENSGNTQASCISDFPCIKVSYETGSQILHYISSTRYHYQNYHKKYHHHHHHHHYPHMALLLRGFCRHPHVRLSPSKTHVGKPVPTNVAYFSSRGPSFPSPAVLKPDIAGPGAQILGAVPPSDLKKNTEFAFHSGTSMATPHIAGIVALLKSLHPHWSPAAIKSAIVTTGWTTDPSGEPIFAEGDPTKLADPFDFGGGIVNPNRAADPGLVYDMGTADYIHYLCTLGYNNSAIFQFTEQSIRCPTREHSILDLNLPSITIPSLQNSTSLTRNVTNVGAVNSTYKASIISPAGTTITVKPDTLIFDSTIKTVTFSVTVSSIQQVNTGYSFGSLTWIDGVHAVRSPISVRTMIKESYANDS* 2050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1267 2049 Pfam Subtilase family 1384 1860 IPR000209 GO:0006508|GO:0008236
Vvi16g1267 2049 Pfam mTERF 328 498 IPR003690 GO:0003690|GO:0006355
Vvi16g1267 2049 Pfam mTERF 92 341 IPR003690 GO:0003690|GO:0006355
Vvi16g1267 2049 FunFam p69E protein-like 1913 2040 - -
Vvi16g1267 2049 Pfam Peptidase inhibitor I9 540 617 IPR010259 -
Vvi16g1267 2049 Pfam Peptidase inhibitor I9 1279 1354 IPR010259 -
Vvi16g1267 2049 FunFam Subtilisin-like protease SBT5.3 1268 1358 - -
Vvi16g1267 2049 FunFam subtilisin-like protease SBT1.5 1603 1731 - -
Vvi16g1267 2049 CDD PA_subtilisin_like 1610 1728 - -
Vvi16g1267 2049 CDD PA_subtilisin_like 845 965 - -
Vvi16g1267 2049 Gene3D Transcription termination factor 3, mitochondrial 61 270 IPR038538 -
Vvi16g1267 2049 Gene3D Transcription termination factor 3, mitochondrial 295 507 IPR038538 -
Vvi16g1267 2049 FunFam Subtilisin-like protease SBT1.5 1386 1614 - -
Vvi16g1267 2049 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1282 2037 IPR045051 -
Vvi16g1267 2049 FunFam subtilisin-like protease SBT1.5 838 972 - -
Vvi16g1267 2049 ProSitePatterns Serine proteases, subtilase family, serine active site. 1825 1835 IPR023828 -
Vvi16g1267 2049 PRINTS Subtilisin serine protease family (S8) signature 1466 1479 IPR015500 -
Vvi16g1267 2049 PRINTS Subtilisin serine protease family (S8) signature 1824 1840 IPR015500 -
Vvi16g1267 2049 PRINTS Subtilisin serine protease family (S8) signature 1384 1403 IPR015500 -
Vvi16g1267 2049 SMART mt_12 350 381 IPR003690 GO:0003690|GO:0006355
Vvi16g1267 2049 SMART mt_12 314 345 IPR003690 GO:0003690|GO:0006355
Vvi16g1267 2049 SMART mt_12 420 451 IPR003690 GO:0003690|GO:0006355
Vvi16g1267 2049 SMART mt_12 241 272 IPR003690 GO:0003690|GO:0006355
Vvi16g1267 2049 SMART mt_12 278 309 IPR003690 GO:0003690|GO:0006355
Vvi16g1267 2049 SMART mt_12 452 484 IPR003690 GO:0003690|GO:0006355
Vvi16g1267 2049 Gene3D Peptidase S8/S53 domain 1667 1912 IPR036852 GO:0004252|GO:0006508
Vvi16g1267 2049 Gene3D Peptidase S8/S53 domain 620 868 IPR036852 GO:0004252|GO:0006508
Vvi16g1267 2049 Gene3D Peptidase S8/S53 domain 893 1113 IPR036852 GO:0004252|GO:0006508
Vvi16g1267 2049 Gene3D Peptidase S8/S53 domain 1359 1637 IPR036852 GO:0004252|GO:0006508
Vvi16g1267 2049 ProSiteProfiles Serine proteases, subtilase domain profile. 623 1097 - -
Vvi16g1267 2049 Pfam Fibronectin type-III domain 1143 1238 IPR041469 -
Vvi16g1267 2049 Pfam Fibronectin type-III domain 1942 2037 IPR041469 -
Vvi16g1267 2049 Pfam Subtilase family 720 1063 IPR000209 GO:0006508|GO:0008236
Vvi16g1267 2049 SUPERFAMILY Subtilisin-like 618 1101 IPR036852 GO:0004252|GO:0006508
Vvi16g1267 2049 FunFam p69E protein-like 1114 1241 - -
Vvi16g1267 2049 ProSitePatterns Serine proteases, subtilase family, serine active site. 1026 1036 IPR023828 -
Vvi16g1267 2049 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1264 1358 IPR037045 -
Vvi16g1267 2049 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 531 619 IPR037045 -
Vvi16g1267 2049 Gene3D - 1114 1241 - -
Vvi16g1267 2049 Gene3D - 1913 2041 - -
Vvi16g1267 2049 CDD Peptidases_S8_3 616 1062 IPR034197 -
Vvi16g1267 2049 SUPERFAMILY Subtilisin-like 1358 1900 IPR036852 GO:0004252|GO:0006508
Vvi16g1267 2049 ProSiteProfiles Serine proteases, subtilase domain profile. 1362 1896 - -
Vvi16g1267 2049 CDD Peptidases_S8_3 1355 1861 IPR034197 -
Vvi16g1267 2049 FunFam Subtilisin-like protease SBT5.3 530 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1267 Vvi-Chr16 21269961 21283495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1267 1273 2049 Subtilisin-like Serine Gene Family AT1G32960 55.146 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi16g1267 Peptidase_S8 1.8e-42 No_clan