Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1261 ATGGGTGAGGTTGTGGTGAGCAGTGAGGCAGGAGGAGGAGGCATGGAGGGTGAGGTGGAGAAGAAGGAGGTGGGCAGTGGGGTTGTGAGGTGGGAGAGGTTTCTTCCCAGAATGGTTCTCAGGGTTTTGTTGGTTGAAGCGGACGATTCCACCAGGCAAATTATCGCTGCGCTTCTCAGGAAATGCAGTTACAAAGTTGCTGCTGTTCCTGATGGCTTAAAGGCATGGGAGGTACTGAAGGCTAGACCCCACAACATTGACCTCATATTGACAGAAGTGGAGTTGCCATCAATATCTGGCTTTGCTCTCCTCACCTTGGTTATGGAACATGAGATCTGCAAAAACATTCCTGTTATAATGATGTCCTCACATGGTTCGATAAACACGGTTTATAAATGCATGTTGAGAGGTGCAGCTGACTTTCTTGTTAAGCCTGTTAGAAGAAATGAGCTGAAGAATTTGTGGCAACATGTCTGGAGAAGACAATCGTCAACTGTTAGCGGAAATGGCCCCCAAGATGAGAGTGTTGCACAACAGAAGGTCGAAGCCACTTCTGAAAACAACCCCACAAGTAATCACTCAAGTGATCATGTTGCTTGTATTCAGAAAAATAAGGAAGCACTCAATAAAGTGAGTGATGCTCAGGATTTCTCAAATCCGACATGGAGCAGATCTCTTGTGAGTGACACAAAAATGCAGAAGAATGAAGAATGTGCCAAATTGGGCCCGAAATTTCTTATGCACAATAAAGAAGCTGGGGGAACACTGGAGGCTGCCTGCAGGGATGTGAACACAATGACTCAGCCTGAAGCAGTGGAACCAGAAAATGATGGGCAAGGTGCTAACGCTCCTAGTGAGGCTTGTGGTAACAATGCCATATTGGGCAGCTCATCTAGAGAAGCCATCGACTTGATTGGAGTATTTGATAATTCTAAAAAATGCACTTATGGAAATTCTTCTTCAAATAATGGCACCAAAAAGAGTGATTCTATTCCACAGTTGGACCTTTCCTTGAGAAGATCTCATCCTAGTAGCCCTGAGAATCAAGTTGCTGATGAAAGGCATACACTGAACCATTCTAATGGCTCGGCCTTTTCACGCTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTTCAATCAGCAGAAAAACTTTGGAGCTGATTCTGATAAACGTTTATCTCAGCTGGTTACTGGTTATAACTCTGATATTACTAGTCCCACACTGAGTACTCAAAGAAGTGTGATCTCTCTAGCTACTAGTCCATCTGGACGAGTTGAAATTGCACTTTGTGGCCCTCAACAGAGAGCTTTTCCTGCTCCAGTTCCAGTGAGAGGTGTAAGGTTTGATGGTCTGTGTACTGGTTATAGTTCTGTGGTTCCCCCAATATTTTCTGCACAATCAGGCCCATCACCTATGCCAAGTCCGGGTTCAGCTGGGCAGCACGAACTCTCCTTTCGAGCAAATCCATGTCACCTATCCAGACATGAAACCAGTGATTCTCAACATCTTTGTAACGCACTTGAGCAAAATGCCAACAATTCCACCAGCCAGACTAATCACAAGCCAGAGCACAAATTGGACTCACTGGAGGGTCAAGGGCACTTCTCTCCTGCCACTGATCAGAATTCAAGTAGTAGTTTTGGTAATGGTGGTGCAAGTAATCTGAATAGCTTTGGGTGTGGAAGCATTTGTGGAAGTAATGGGAATGCCAATACAGTTGCTGTTGTTCAGGCCGCTGCAGAGGGCAAGAATGAAGAAGGTATCTTCAGTCATGAAGGACACTCTCAACGATCTATCCAAAGAGAAGCTGCTCTAACCAAGTTTCGCTTGAAGCGGAAAGACAGATGCTTTGAGAAGAAGGTTCGTTATGAAAGCAGAAAGAAGCTTGCAGAGCAGCGACCCCGAGTAAAAGGACAGTTTGTTCGACAAGTGCATACCATCCCCCCACCTGCAGAGCCTGATACATACTATGGCAGTTCGTTTGATGGTTAG 2010 0.4537 MGEVVVSSEAGGGGMEGEVEKKEVGSGVVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEVLKARPHNIDLILTEVELPSISGFALLTLVMEHEICKNIPVIMMSSHGSINTVYKCMLRGAADFLVKPVRRNELKNLWQHVWRRQSSTVSGNGPQDESVAQQKVEATSENNPTSNHSSDHVACIQKNKEALNKVSDAQDFSNPTWSRSLVSDTKMQKNEECAKLGPKFLMHNKEAGGTLEAACRDVNTMTQPEAVEPENDGQGANAPSEACGNNAILGSSSREAIDLIGVFDNSKKCTYGNSSSNNGTKKSDSIPQLDLSLRRSHPSSPENQVADERHTLNHSNGSAFSRYINRSLQPPHLPSTGVFNQQKNFGADSDKRLSQLVTGYNSDITSPTLSTQRSVISLATSPSGRVEIALCGPQQRAFPAPVPVRGVRFDGLCTGYSSVVPPIFSAQSGPSPMPSPGSAGQHELSFRANPCHLSRHETSDSQHLCNALEQNANNSTSQTNHKPEHKLDSLEGQGHFSPATDQNSSSSFGNGGASNLNSFGCGSICGSNGNANTVAVVQAAAEGKNEEGIFSHEGHSQRSIQREAALTKFRLKRKDRCFEKKVRYESRKKLAEQRPRVKGQFVRQVHTIPPPAEPDTYYGSSFDG* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1261 669 Pfam CCT motif 607 649 IPR010402 GO:0005515
Vvi16g1261 669 Gene3D - 38 270 - -
Vvi16g1261 669 MobiDBLite consensus disorder prediction 540 554 - -
Vvi16g1261 669 ProSiteProfiles Response regulatory domain profile. 41 159 IPR001789 GO:0000160
Vvi16g1261 669 CDD psREC_PRR 42 145 - -
Vvi16g1261 669 SUPERFAMILY CheY-like 40 164 IPR011006 -
Vvi16g1261 669 MobiDBLite consensus disorder prediction 162 196 - -
Vvi16g1261 669 ProSiteProfiles CCT domain profile. 607 649 IPR010402 GO:0005515
Vvi16g1261 669 MobiDBLite consensus disorder prediction 337 356 - -
Vvi16g1261 669 MobiDBLite consensus disorder prediction 518 554 - -
Vvi16g1261 669 Pfam Response regulator receiver domain 42 153 IPR001789 GO:0000160
Vvi16g1261 669 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 234 IPR045279 GO:0009736
Vvi16g1261 669 SMART REC_2 40 155 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1261 Vvi-Chr16 21231705 21237766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1261 587 656 Response Regulator Gene Family AT5G24470 72.857 3.65e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vvi16g1261 Response_reg 5.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1261 K12130 - vvi:100853219 1258.43