Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1256 ATGGGTTCGACCAGTATGACCCCAACAACTATCCTAGAGTCAGATGAGGAGGCATCTCTGTTTTCCATGCAGCTCGTCAGTGCCTCAGTTCTCCCCATGGTCCTCAAATCAGCTTTGGAGCTCGACCTTCTTGAGATAATCGCCAAGGCTGGCCCTGGGGCGTTTGTCTCCACTTCTGAGATTGCTGCTCAGATCCCCACCCACAACCCAGAAGCCCCTGTCATGCTGGACCGTATCCTCCGCCTTCTTGCCACCTATGCTGTGGTCAAGTGCTCTCTTCGCAACCTCCCTGATGGAGGGGTTGAGAGGCTCTATGGGCTCGCCCCTGTCTGCAAGTACTTGACTAGGAACGAAGATGGGGTGTCTGTAGCCCCTCTTCTCCTCATGAATCAGGACAAGGTCCTCATGGAGAGCTGGTACTATTTGAAAGATGCAGTTCTTGATGGTGGAATCCCCTTCAACAAAGCCTATGGAATGACTGCCTTTGAGTATCATGGCACAGATCCTAGATTCAACAAGGTGTTCAACAATGGAATGTCTGGTCATTCCACCATTACCATGAAGAAAATTCTTGAAGCCTACAAGGGTTTTGAGGGCCTCACCTCAATTGTTGATGTTGGTGGTGGGACTGGAGCCACCCTTAACATGATCATATCCAAATACCCCACTATTAAGGGCATTAACTTTGACTTGCCTCATGTTATTGATGATGCCCCATCTTATCCTGGTGTGGAGAATGTTGGGGGAGACATGTTTGTGAGTGTCCCAAAGGGAGATGCCATCTTCATGAAGTGGATATGCCATGATTGGAGTGATGCTCATTGCTTGAAGTTCTTGAAGAACTGTTATCAGGCACTTCCAGACAATGGGAAGGTAATTGTTGCTGAATGCATCCTTCCTGTGGCCCCAGACACCAGCCTAGCCACCAAGGGTGTCGTCCATATCGACGTTATCATGTTGGCTCATAACCCTGGTGGAAAAGAGAGGACCGAGAAAGAATTCGAAGCCTTGGCCAAGGGAGCTGGATTCCAAGGCTTCAAGGTAGTGTGTTGTGCCTTCAACACTTGGATCATGGAATTTTGTAAAACTAACGGTTCGAACAGTATGAACCAAGGTTTTTCTTCTTCTGCCGAGTTCAATTCCCCCGTCCCAGCAACTATCCCAAAGTCAGAGGAAGATACGTTTGTGTTTGCCACTCTTCTCACCAGTGCCTCAGTTCTCCCCATGGCCCTCAAATCAGCTTTGGAGCTCGACCTTCTTGAGATAATCGCCAAGGCTGGCCCTGGGGCGTTTGTCTCCACTTCTGAGATTGCTGCTAAGGTCACCAAACGCAACCCAAAAGCCCCTGTCATGCTAGACCGTATCCTCCGCCTTCTTGCCACCTATGATGTGGTCAAGTGCTCTCTCCGCGACAGCCCTGATGGAGGGGTTGAGAGGCTCTATGGGCTCGGCCCTGTCTGCAAGTACTTCACTACGAACGAAGATGGGGTGTCTGTAGCCCCTCTTCTCCTCATGAATCAGGACAAGGTCCCCATGCAGAGCTGGTACCATTTGAAAGATGCAGTTCTTGATGGTGGAATCCCCTTCAACAAGGCCTATGGAATGACTGACTTTGAGTATCATGGCACAGAACCTAGATTCAACAAGGTATTCAACAATGGAGTGTCTGGTCATCCCACCATTACCATGAAGAAAATTCTTGAAGCCTACAAGGGTTTTGAGGGCCTCACCTCAATTGTTGATGTTGGTGGTGGGACTGGAGCCACCCTTAACATGATCATATCCAAATACCCCACTATTAAGGGCATTAACTTTGACTTGCCTCATGTTATTGATGATGCCCCATCTTATCCTGGTGTGGAGCATGTTGGGGGAGACATGTTTGTGAGTGTCCCAAAGGGAGATGCCATCTTCATGAAGTGGATGTGCTATGAGTGGGATGATGCTCATTGCTTGAAGTTCTTGGAGAATTGTTATCAGGCACTTCCAGACAATGGAAAGGTAATTGTTGCTGAGTGCATCCTTCCTGTGGTCCCAGACACCAGCCTAGCCACCAAGACTGCCGTCCATATTGACGTTATTATGTTGGCTTATAACACTGGTGGAAAAGCGAGGACAGAGAAAGAGTTCGAAGCCTTAGCCAAGGGAGCTGGATTCCAAGGTTTCAAGGTAGTGTGTTGTGCCTTCAACAGTTGGATCATGGAATTTTGTAAAACTGCTTGA 2223 0.4867 MGSTSMTPTTILESDEEASLFSMQLVSASVLPMVLKSALELDLLEIIAKAGPGAFVSTSEIAAQIPTHNPEAPVMLDRILRLLATYAVVKCSLRNLPDGGVERLYGLAPVCKYLTRNEDGVSVAPLLLMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNNGMSGHSTITMKKILEAYKGFEGLTSIVDVGGGTGATLNMIISKYPTIKGINFDLPHVIDDAPSYPGVENVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCYQALPDNGKVIVAECILPVAPDTSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKGAGFQGFKVVCCAFNTWIMEFCKTNGSNSMNQGFSSSAEFNSPVPATIPKSEEDTFVFATLLTSASVLPMALKSALELDLLEIIAKAGPGAFVSTSEIAAKVTKRNPKAPVMLDRILRLLATYDVVKCSLRDSPDGGVERLYGLGPVCKYFTTNEDGVSVAPLLLMNQDKVPMQSWYHLKDAVLDGGIPFNKAYGMTDFEYHGTEPRFNKVFNNGVSGHPTITMKKILEAYKGFEGLTSIVDVGGGTGATLNMIISKYPTIKGINFDLPHVIDDAPSYPGVEHVGGDMFVSVPKGDAIFMKWMCYEWDDAHCLKFLENCYQALPDNGKVIVAECILPVVPDTSLATKTAVHIDVIMLAYNTGGKARTEKEFEALAKGAGFQGFKVVCCAFNSWIMEFCKTA* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1256 740 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 495 736 IPR029063 -
Vvi16g1256 740 Gene3D Vaccinia Virus protein VP39 115 362 IPR029063 -
Vvi16g1256 740 Gene3D Vaccinia Virus protein VP39 491 738 IPR029063 -
Vvi16g1256 740 Pfam O-methyltransferase domain 139 344 IPR001077 GO:0008171
Vvi16g1256 740 Pfam O-methyltransferase domain 515 720 IPR001077 GO:0008171
Vvi16g1256 740 FunFam Caffeic acid O-methyltransferase 491 738 - -
Vvi16g1256 740 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 399 738 IPR016461 GO:0008168
Vvi16g1256 740 PANTHER O-METHYLTRANSFERASE 23 346 IPR016461 GO:0008168
Vvi16g1256 740 CDD AdoMet_MTases 579 670 - -
Vvi16g1256 740 Pfam Dimerisation domain 33 84 IPR012967 GO:0046983
Vvi16g1256 740 Pfam Dimerisation domain 409 460 IPR012967 GO:0046983
Vvi16g1256 740 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 362 IPR016461 GO:0008168
Vvi16g1256 740 SUPERFAMILY "Winged helix" DNA-binding domain 14 118 IPR036390 -
Vvi16g1256 740 FunFam Caffeic acid 3-O-methyltransferase 376 490 - -
Vvi16g1256 740 Gene3D - 383 490 IPR036388 -
Vvi16g1256 740 Gene3D - 3 114 IPR036388 -
Vvi16g1256 740 FunFam Caffeic acid O-methyltransferase 115 362 - -
Vvi16g1256 740 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 360 IPR029063 -
Vvi16g1256 740 FunFam Caffeic acid 3-O-methyltransferase 1 114 - -
Vvi16g1256 740 SUPERFAMILY "Winged helix" DNA-binding domain 390 493 IPR036390 -
Vvi16g1256 740 CDD AdoMet_MTases 203 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1256 Vvi-Chr16 21165542 21177943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1256 375 738 Monolignol Biosynthesis Gene Families AT5G54160 70.959 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1256 K13066 - vvi:100232862 752.281