Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1253 ATGGAGATGGTGCTACCTCTAGTTTTGGTATTAGTATTTTCCCTGACCTCTCAGATTGAAGCTGAGCTTCAAGTGGGATTCTACAGAGACAAATGCAGAGCTGAATCAATTGTGAAGGACGAAGTTGAAAAGGCCTTCGACAGAGACAGGGGAATTGCTCCTGGTCTGTTGAGACTGCATTTTCATGATTGCTTTGTTAGGGGATGTGATGCATCCATCCTTGTAGACTCAACCCCAATGAATGTAGGCGAGAAGGATGGTCCACCCAATGTCAATACTCTCCGTGGGACCGAAGTGATCGACAGTGCCAAGGCTAGACTAGAAGCTGAATGTAAAGGAGTAGTCTCTTGTGCAGATACTCTTGCATTTGCAGCAAGAGATGCTGTAGAAATAAGCAACGGCTTTGGGTGGTCAGTTCCAGCAGGGAGGCGAGATGGAAGGGTGTCACTTGCTTCTGAGACTCTAGACATACCTGCTCCATTTCTTAACCTTGATCAACTCACCCAGTCCTTTGCTAAGAAGGGACTAACACAGGAAGAGATGGTCACGCTCTCCGGCGCTCACACAATTGGCCATGCTCATTGCACCTCATTCAGCAACAGACTATATGACTTCAATGCATCGTCTAGCCAAGACCCGAGTTTAAACCCCCTATATGCTGAGGATTTGAAGAGACAATGCCCAAGAGGTCCACAGGGAACTGTTGATCCTAACCTCGTTGTGGACATGAACTTCAGCCCAGCTGTGATGGACTCGAGCTATTACACAGATGTTCTTCATCACCGTGGCCTGTTCACGTCTGATCAGGCACTCACAACCAGCCAGGCTACTGCCAGGCAAGTGACCACATATGCAGTAAATAGGTTGCTTTGGGAGTCGGAGTTTGCTAAAGCAATGGTGAAGATGAGTCAAATTGAAGTACTAACAGGAACTGATGGAGAGATTCGAACCAACTGGAACCAATCATATCCATTTAAGATGGTTCTGACTTCTACTATAAATACCTATAACAATGTTATAGCCTATAAGCACAAAGAAGTAATGAGTTCGAAAAGGGTTACTTGGTTGTCTTTAACTTGGGTTCTGGTTTTCTTATGTCTAAGTGTTGAGTTGGAAGCTCAGCTTCAAGTGGGGTTCTATAGAACCTCATGTGGCTTGGCTGAATTCATAGTGAAAGATGAGGTTAGGAAAGGGTTCATTCGGGACAGTGGGGTGGCTCCTGGCCTGGGTTGCGATGGGTCAGTGCTCATCGATTCGACTCCCTCAAACACAGCAGAAAAGGATTCTCCTGCTAACAACCCTAGTCTTAGAGGGTTTGAAGTCATTGATAGTGCAAAGGCTAGACTCGAAGCTGTGTGCAAGGGAGTGGTTTCATGTGCTGATATAGTTGCCTTTGCAGCAAGGGATAGCGTGGAGATAACCGGAGGGCTTGGCTATGATGTCCCTGCAGGAAGAAGAGATGGCAGAATTTCACTAGCTTCAGAGGCATCGACAAACTTACCACCCCCGACCTTTACTGTCGACCAACTCACTCAGTTCTTTTCAAACAAAGGATTGACACAGGATGAAATGGTGACTCTCAGTGGAGCACACACAATTGGCCGTTCGCATTGCAGTTCCTTCAGCAACAGGTTGTACAATTTCAATGGAACATCGGGCCAGGACCCTACTCTAGATCCCCAGTATGCAGCCAGTTTGAAGACACAGTGCCCGCAAGGTAGCACAAATACTAACTTGGTGGTTCCAATGAACCCCTCTAGCCCAAGCATCACAGACGTAGGCTACTATGTCGATGTTCTAAGAAACAGAGGTTTGTTTACATCAGATCAGACTCTCCTAACAGACACAACAACAGCAACCCAAGTAAGACAAAATGCAGGGAATCCGTTTCTCTGGAAGAACAAATTTGCTTCTGCAATGGTGAAGATGGGCCAACTTGGTGTCTTAATTGGTGAAGCAGGACAGATTCGAGCCAATTGCAGGGTTATCAACAGCTAA 1998 0.464 MEMVLPLVLVLVFSLTSQIEAELQVGFYRDKCRAESIVKDEVEKAFDRDRGIAPGLLRLHFHDCFVRGCDASILVDSTPMNVGEKDGPPNVNTLRGTEVIDSAKARLEAECKGVVSCADTLAFAARDAVEISNGFGWSVPAGRRDGRVSLASETLDIPAPFLNLDQLTQSFAKKGLTQEEMVTLSGAHTIGHAHCTSFSNRLYDFNASSSQDPSLNPLYAEDLKRQCPRGPQGTVDPNLVVDMNFSPAVMDSSYYTDVLHHRGLFTSDQALTTSQATARQVTTYAVNRLLWESEFAKAMVKMSQIEVLTGTDGEIRTNWNQSYPFKMVLTSTINTYNNVIAYKHKEVMSSKRVTWLSLTWVLVFLCLSVELEAQLQVGFYRTSCGLAEFIVKDEVRKGFIRDSGVAPGLGCDGSVLIDSTPSNTAEKDSPANNPSLRGFEVIDSAKARLEAVCKGVVSCADIVAFAARDSVEITGGLGYDVPAGRRDGRISLASEASTNLPPPTFTVDQLTQFFSNKGLTQDEMVTLSGAHTIGRSHCSSFSNRLYNFNGTSGQDPTLDPQYAASLKTQCPQGSTNTNLVVPMNPSSPSITDVGYYVDVLRNRGLFTSDQTLLTDTTTATQVRQNAGNPFLWKNKFASAMVKMGQLGVLIGEAGQIRANCRVINS* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1253 665 SUPERFAMILY Heme-dependent peroxidases 374 664 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 Gene3D Peroxidase, domain 2 158 302 - -
Vvi16g1253 665 Gene3D Peroxidase, domain 2 501 643 - -
Vvi16g1253 665 PANTHER PEROXIDASE 25-RELATED 11 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 FunFam Peroxidase 501 643 - -
Vvi16g1253 665 ProSitePatterns Peroxidases proximal heme-ligand signature. 523 533 IPR019793 -
Vvi16g1253 665 FunFam Peroxidase 26 160 - -
Vvi16g1253 665 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Vvi16g1253 665 Gene3D - 378 664 - -
Vvi16g1253 665 FunFam Peroxidase 158 302 - -
Vvi16g1253 665 ProSiteProfiles Plant heme peroxidase family profile. 22 318 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 CDD secretory_peroxidase 374 663 IPR033905 GO:0004601|GO:0042744
Vvi16g1253 665 Gene3D - 26 318 - -
Vvi16g1253 665 SUPERFAMILY Heme-dependent peroxidases 23 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 CDD secretory_peroxidase 22 318 IPR033905 GO:0004601|GO:0042744
Vvi16g1253 665 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Vvi16g1253 665 Pfam Peroxidase 38 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 Pfam Peroxidase 402 626 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 ProSiteProfiles Plant heme peroxidase family profile. 374 664 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g1253 665 FunFam Peroxidase 408 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1253 Vvi-Chr16 21152035 21155296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1253 361 663 Peroxidase AT5G42180 41.083 3.98e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1253 K00430 - vvi:100854291 648.277