Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1247 ATGGCTGTTCTGTCTTTCAATTCTCTGCCTCTGGGGTTCAGGTTTCGACCCACTGACGAGGAGCTGATTACGCATTACTTGCGCTTGAAGATCAGTGGGAATGATGAGGAAGTCAGAGTCATTCGGGAGATCGATGTATGCAAATGGGAGCCCTGGGATTTGCCTGATTTGTCGGAGATCAGGACGAACGATATGGAGTGGTTCTTCTTCTGTCCCCGGGATCGGAAGTATCCAAATGGGCACAGATTGAACAGAGCGACGGCAGCTGGGTATTGGAAAGCCACCGGAAGGGATCGGCAAATCAAGTCAAAGACGCGCTTGGTGGGGATGAAGAAAACTCTGGTTTTCCATACTGGGCGAGCTCCTCATGGGAAGAGGACCGTTTGGGTAATGCACGAGTACCGTGCCACTGCTAAAGAGCTCGATGGTACCCACCCCGGCCAGGCAGCATTTGTCCTCTGTCGCTTATTTAAGAAGCAAGATGAGAAAGCTGAAGGGTCGAACCCTGATGAAATTGAACCCACTGTTCCATCCCCTACCCCAGCTAATTCTCCCGAGGAAACAGAGTTTGAGGTTGCATTACCTCAAGTAGCTCCAGTGGAAAAGCAAGAAGAAGAGCAACCTGGTTTTGCTGAAGGCTGTCCAGGTGAAAATCCTGATGAAATGACCGCTGAGAGTTCCGTTCCTGTTGGTTTCTGCAGCAATCCCCTTAATGCCTATGATGAAGAAGACTCATTGGCAAAACTAACAGCTGCTGAGGTGGATCCATCTCTGCAAGAGGACTTTGGCTTTTTTCAGGATCAAATGCTAGAGCAATTAGATTACCAGCTTTTCTCCCCGGTGCATTCGCAGTGGCATATGGGGTTAGAATCTTATGTGAGCTACCCTGTCACTGGCAACTTCAGCAATGGGCACAACGGGGAAAATGAGTATGGCACAAATGAACCGGATCCTGATGTTACTGAATTTTTGGAGTCAGTCCTCAAGGAAAATGGATCATGCAGTGAGTCAGATACAGTGAGTCAAACACAGCTTGATGTGGAGTTTGATGCTTCTGCGGTCATCATTGATAACATTAAAACAGAGGCACTACAAGAGATGGAAACAAATATCAGTGCTTTCAAGACTACCACTGGCAACAGTGCTGTCGAGTACAGTGGCAATATGGGTTTCTCACATAATAACTTCGTTGGCAGTAGTGATATTACTGGACCTGTAATCAAGAGAAGGACACGGCAACCACAAATTCAATCAGATGCCAACAACTGTGGGCCACAAGGAACGGCACGAAGAAGAATTCGTCTGCAGACAAAACTGGAAGTTAGACATGCTTGCAGCATGTCAAGAGATTTGAACTGCAAGGAAGAAGCTGAGGTGGGACAAGCTTCACAAAGCGATACTAGTGGTACCACTGATGAGAACCAGAAAATTGAAGTCAAGAAAGTTGATCAAGAACTGAAAATGAGCATGAGCCTGCTGAGGTTCAGGTCAAAATACAAGGTTCCATCCGTGTTCTCAAAGGTTCCGGTTCCTCCTGCATGTCACCTAATTGCCTCGTCTGTTTCTTTGCTTAGGGTAGTTGGGCTTGTAGGCTTGTTTGTAATTTTTATCGGCACCTGGATATGCCGTGAATATTCAGTCGCGTAG 1647 0.4706 MAVLSFNSLPLGFRFRPTDEELITHYLRLKISGNDEEVRVIREIDVCKWEPWDLPDLSEIRTNDMEWFFFCPRDRKYPNGHRLNRATAAGYWKATGRDRQIKSKTRLVGMKKTLVFHTGRAPHGKRTVWVMHEYRATAKELDGTHPGQAAFVLCRLFKKQDEKAEGSNPDEIEPTVPSPTPANSPEETEFEVALPQVAPVEKQEEEQPGFAEGCPGENPDEMTAESSVPVGFCSNPLNAYDEEDSLAKLTAAEVDPSLQEDFGFFQDQMLEQLDYQLFSPVHSQWHMGLESYVSYPVTGNFSNGHNGENEYGTNEPDPDVTEFLESVLKENGSCSESDTVSQTQLDVEFDASAVIIDNIKTEALQEMETNISAFKTTTGNSAVEYSGNMGFSHNNFVGSSDITGPVIKRRTRQPQIQSDANNCGPQGTARRRIRLQTKLEVRHACSMSRDLNCKEEAEVGQASQSDTSGTTDENQKIEVKKVDQELKMSMSLLRFRSKYKVPSVFSKVPVPPACHLIASSVSLLRVVGLVGLFVIFIGTWICREYSVA* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1247 548 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Vvi16g1247 548 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Vvi16g1247 548 MobiDBLite consensus disorder prediction 162 225 - -
Vvi16g1247 548 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Vvi16g1247 548 FunFam Nac domain-containing protein 86 18 162 - -
Vvi16g1247 548 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 242 - -
Vvi16g1247 548 MobiDBLite consensus disorder prediction 456 476 - -
Vvi16g1247 548 MobiDBLite consensus disorder prediction 458 472 - -
Vvi16g1247 548 Pfam No apical meristem (NAM) protein 10 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1247 Vvi-Chr16 21112035 21114675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1247 1 439 NAC Transcription Factor Family AT3G49530 42.667 3.56e-95 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi16g1247 NAM 6.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1247 - - vvi:100255616 1072.77