Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi16g1245 | ATGGATGTTGCAGAGGAAGCTGGAGAAGTGAGGGGAGACTTGATGAAGAAGATGCAGAAGATCAAGAGGAATGAGCACAAGCACTGGAGCAGCAGAATAAGCTTTTCAGCTAGTTTGCCTGGTGATGTGTGTGGGGGTTTTGCCGACAGTGTGTGTGCAGTGAAATACTCCATGGATCCATTCTCAGATATGAGAGAATCAATAATGGAGATGATTAGGGAGGTGGGTGTTCATGACTGGAATGAAATGGAGGAGTTGGTGTATTGCTACATTGCTCTCAACTCATCTCAGGTTCATCAGTTCATTCAAGATGCTTTTCTTAGTTTATGTTCTTCTTCTTCTCCATAA | 348 | 0.4339 | MDVAEEAGEVRGDLMKKMQKIKRNEHKHWSSRISFSASLPGDVCGGFADSVCAVKYSMDPFSDMRESIMEMIREVGVHDWNEMEELVYCYIALNSSQVHQFIQDAFLSLCSSSSP* | 116 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi16g1245 | 115 | Pfam | Transcriptional repressor, ovate | 57 | 111 | IPR006458 | - | |
| Vvi16g1245 | 115 | PANTHER | TRANSCRIPTION REPRESSOR OFP7-RELATED | 26 | 110 | IPR038933 | GO:0045892 | |
| Vvi16g1245 | 115 | ProSiteProfiles | OVATE domain profile. | 53 | 112 | IPR006458 | - | |
| Vvi16g1245 | 115 | NCBIfam | uncharacterized plant-specific domain TIGR01568 | 52 | 111 | IPR006458 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi16g1245 | Vvi-Chr16 | 21098284 | 21098631 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | OFP | Vvi16g1245 | Ovate | 2.5e-20 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi16g1245 | - | - | ming:122077991 | 128.642 |