Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1243 ATGGGTTCTTGCAACTGCCTCCTATGGCTGATGATGCTCTGTTCATCCTGTCTCCTATGCTTATTGGAATACCCGGTTCTGGTGAGCTCCCATAATGACAAGAGGCTCAGTTCCGGACCTCTTGTTAACGTGTCTAAGCATCTCTCTTTTCCAGATTTCAGTTCAAGCAATCCCAGTGTGTACCAGGATGTCAAGCTTCTAGGCAGTGCGAAGTTCTCTGATGATAAGGCCTCACTCCAAATCCCAGATGCTTCGCAAGCTGTTGATCTTAGACACCAAGCAGGGCGAGCCATCTACTCCGCTCCCATCCGCCTCTTCGATCCTCCCACCCAAACCCCAGCTTCATTCCAGACCACCTTTTCTTTCCAGTTCAACAACAGTTATGGTAAAGGGACATCAAATTCTAGTAGTGGTCTGGGTAGCAGTGGCTTTGCCTTCATCATTGTCCCGGATGAGTTCACTGTGGGAAGGCCGGGCCCGTGGCTGGCCATGCTCAACGACGCCTGTGACGATGACTACAAATCTGTTGCGATCGAGTTTGATACACACAAGAATCCAGAGTTTGGAGACCCCAACGACAACCATGTGGGCATTAATCTGGGTACCATTGTTTCCACCACAACCAGAATTGTCTCTCTCAAAGACGGTTCAATGCACCAGGCTTGGATTAGCTACGATGGCCTCCATAGATGGATGGACCTCCGACTAGGATCAGACAATAGTGGTTATCCATCACAACCCATCTTCTCAGGGCCCCTGGATATCTCACCTTATCTGAAAGAGTATATGTTTGTGGGGTTCTCTGCTTCTACGGGTAACCACACCCAAATTCACAACATACTCTCCTGGAATTTCACATCAACCAGTCAAGCTTCTCTTCTAGTCCCTTCAACTGAAACGTGTGAGAGTAAGGTCATCGTTAACGGTGGTCAGAGTACCAATAGCTCTAAGACAAAGGCTCCAAGTAGTTTCCTGATCTTCCTTGCTGTGGTTGTTCTGGGTCTAGCTGTTCTGCTCAATCTCTACTACAACGGTAAACGCAGACACAAAGAACCATCCGTGGTATTGCTCTCTGAGAAAAAGCAGCGACCACAGCCACCTAACAAGCCTCGCCGCTTCACCATTTCTGAGATTTCCTCAGCGACTCGGTGTTTTAGTGACTCGCAAGAGCTGGGTAGTGACTCGAGAGGCACTTTCTATAAAGGAACGCTTCTGAATGGTTCCCACGTGGCTGTGAAGCGATTCTCAGCTCAGTTTTTGAGCTCACAGGGATTGGATAGACGGAGAATCATGAAGGAAATTGGAGCTGTGAGCCGGGTTCGTCACCCAAACTTGGTCCCAATCAGAGGATGGTGTAAAGATAACAGAGAAACTATGGTTGTGTATGATTATCTTCCCAATGGAAGCCTTGACAAGTGGCTATTCGGAGCTGGTGTTCTTCCTTGGACCAGGCGATTCAAGGTGGTAAAAGATGTTGCAGACGGGCTAAGTTTCATCCACTCTAAACAACTAGCTCACAAGAACATGAAGACAAGCAGCGTATTCCTTGACATTAGTTTTCGAGCCATGCTAGGTGATTTTGGATTGGTACTCTCTGCATCAGACTCCAAGAGATTTGAAGCAGCAGTGAGCCAGAAAGCTGATGTGTTTGATTTTGGGGTCTTTGCATTGGAAGTGGTTGCTGGGAGGAGGAGAATGGAGCCAGAGGCAGGTGATGAGCAGAAGGATTTGTTAGATTTTGCGTGGAGAATGCATGAAAAGGATGAGAGGGTGAGGGTGGTGGATAGGAGGATGGGCTCAGTGATCAACTTGGAACAAGCCATTCTAGTATTGGAGATTGGGTTGCTCTGTACATTAAATGAGACCAAGGGACGACCTTCTATGGAGGAAGTGGTGGGATTTTTGGCCATGGACAGACCAGTACCTCAGTTGCCGCCTTGTCGACCCATCTCCTTGTTCCCCTACAGCAGCACCACTGGTCTGTGCAGTGGAAATCCCTGCTCTCTTTTCAAGTGA 2016 0.4826 MGSCNCLLWLMMLCSSCLLCLLEYPVLVSSHNDKRLSSGPLVNVSKHLSFPDFSSSNPSVYQDVKLLGSAKFSDDKASLQIPDASQAVDLRHQAGRAIYSAPIRLFDPPTQTPASFQTTFSFQFNNSYGKGTSNSSSGLGSSGFAFIIVPDEFTVGRPGPWLAMLNDACDDDYKSVAIEFDTHKNPEFGDPNDNHVGINLGTIVSTTTRIVSLKDGSMHQAWISYDGLHRWMDLRLGSDNSGYPSQPIFSGPLDISPYLKEYMFVGFSASTGNHTQIHNILSWNFTSTSQASLLVPSTETCESKVIVNGGQSTNSSKTKAPSSFLIFLAVVVLGLAVLLNLYYNGKRRHKEPSVVLLSEKKQRPQPPNKPRRFTISEISSATRCFSDSQELGSDSRGTFYKGTLLNGSHVAVKRFSAQFLSSQGLDRRRIMKEIGAVSRVRHPNLVPIRGWCKDNRETMVVYDYLPNGSLDKWLFGAGVLPWTRRFKVVKDVADGLSFIHSKQLAHKNMKTSSVFLDISFRAMLGDFGLVLSASDSKRFEAAVSQKADVFDFGVFALEVVAGRRRMEPEAGDEQKDLLDFAWRMHEKDERVRVVDRRMGSVINLEQAILVLEIGLLCTLNETKGRPSMEEVVGFLAMDRPVPQLPPCRPISLFPYSSTTGLCSGNPCSLFK* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1243 671 Pfam Protein tyrosine and serine/threonine kinase 388 541 IPR001245 GO:0004672|GO:0006468
Vvi16g1243 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 289 IPR013320 -
Vvi16g1243 671 SUPERFAMILY Protein kinase-like (PK-like) 364 635 IPR011009 -
Vvi16g1243 671 Gene3D Transferase(Phosphotransferase) domain 1 465 640 - -
Vvi16g1243 671 PANTHER - 83 638 - -
Vvi16g1243 671 Gene3D - 45 300 - -
Vvi16g1243 671 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 347 464 - -
Vvi16g1243 671 CDD lectin_legume_LecRK_Arcelin_ConA 47 288 IPR001220 GO:0030246
Vvi16g1243 671 Pfam Legume lectin domain 48 292 IPR001220 GO:0030246
Vvi16g1243 671 Gene3D Phosphorylase Kinase; domain 1 347 464 - -
Vvi16g1243 671 FunFam Lectin-domain containing receptor kinase A4.2 465 642 - -
Vvi16g1243 671 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 45 295 - -
Vvi16g1243 671 ProSiteProfiles Protein kinase domain profile. 385 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1243 Vvi-Chr16 21086956 21088971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1243 79 651 Receptor kinase-like Gene Family AT5G55830 30.968 3.32e-88 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi16g1243 PK_Tyr_Ser-Thr 2.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1243 - - vvi:100248709 1283.86