Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1228 ATGGACGTGAAGAAGAAGAAGAAGACTGAGGGAGATGGTGATACAGCAATGGGGGAGGAGGCTCTGCCATTTCATAAGCTTTTGAGCTATGCAGATGGTTTGGATTGGGTTCTCATGGCACTGGGCACCTTGGGCTCCATTGTCCATGGCCTGGCCCAACCAGTAGGGTACTTGCTGCTTGGCAAAGCCCTCGACGCATATGGGACCAACATCAAGGATCCCGAAGCCATGGTTGATGCCCTCTACAAGGTTGTTCCTTATGTGTGGTATATGGCTGCCGCCATGTTTCCTGCCGGAATACTAGAGGTTGGGTGTTGGATGCATGCAAGTGAAAGACAGGTCTCACGTCTACGACTAGCATTCCTGAGGGCAGCCCTTAACCAGGAGATTGGAGCTTTTGACACTGATCTAACAAGTGGAAAAATCATCAGTGGAATAAGCAGCCACATGAGTATCATACAAGATGCTATAGGGGAGAAGTTGGGCCATTTTCTATCAAACATCGCAACGTGCTTCTCTGGAATATTGATCGCTGCCATTTGCTGTTGGGAAGTTTCACTGCTCACCTTGTTGGTTGTTCCTTTGGTTCTTGTGACTGGAGCCACTTATAGCAAGAAGATGAATGCCATTTCAGCTGCAAAAATGCATTTCCTGTCAGAAGCCACATCCATGATAGAACAGACACTATCTCAAATCAAAACAGTATTTGCATTCGTGGGAGAGAGTACTGCTGCCAAGTCTTTCTCAGAGTGCATGGACAAACAGTTCAGGATAAGCAAGAGAGAGGCAATAATAAAGGGAGTTGGGACAGGTTTGTTTCAAACTGTAACCACCTGTTGCTGGGCTCTGATCATTTGGGTTGGAGCCATTGTTGTCACAGCCAAGAGATCAAGTGGAGGAGACATCATAGCGGCAGTGATGAGCATTCTCTTTGGAGCTATATCACTCACTTATGCTGCACCAGACATTCAAATCTTTAATAGTGCAAAGGCTGCAGGAAATGAGGTTTTTCAGGTGATCAAAAGAAAACCTGCCATAAGCTATGATTCTGAAGGGAAAACACTCGAGAAGATCAATGGCAATATTGACATGCAGGATGTATACTTCACCTACCCATCCCGGAAAGAGAGATTAATCCTTGATGGATTTTCATTTTCCATCCCAGCAGGAAAGGTGGTGGCTTTAGTGGGTAGTAGTGGGTGTGGGAAGAGCACTGTCATCTCCCTAGTTGCGAGATTCTATGATCCATCACAAGGTGAGATTCTCATTGACAACTACAACATTAAGGATCTAGACTTGAAGTTCCTCCGAAAGAACATAGGAGCAGTATTTCAAGAGCCATCGCTCTTTTCTGGCACCATCAAGGATAACATTAAAGTAGGAAGCATGGAAGCAGATGATCAAGAAGTCCAGAATGTAGCATTGATGGCAAATGCACACTCTTTCATAACCCAACTCCCAGATCAGTACTCAACAGAGGTAGGAGAAAGAGGAGTGCAATTATCAGGTGGACAAAAACAGAGAATAGCAATAGCAAGAGCCATTATAAAGAATCCTCCAATTCTTTTACTTGATGAGGCCACAAGTGCACTTGATTCAGAGTCAGAGAAGCTGGTTCAAGCTGCTATTGAGAAAGCTATGCAGGGGAGAACAGTCATCTTGATTGCACACAGGATGTCAACTGTGATTAATGCAGATATGATTGCAGTCATAGAGAATGGCCAAGTTAAAGAGACGGGAACACACAGCGACTTGCTAGATACCAGCAATTTCTATAATAATTTATTTAACATGCAGAACCTCTGTCCAGACCAAGGCTCAAGAGTTACAGATCTTACTGAAGAAAATGCAAGTACAGACCAAGAGATTTCATTTCAAGACCTGGACCAATCTGAGGAACCCAACAAACATCCTAGAGATGCTTTGAAGGAAGAGGAACAGAGGGTTAGAGGGAAAAGAGTTCAGTTTTTCAGAATCTGGTTTGGCTTGAAGAAAAGTGAGCTTATAAAGACTGCTATTGGCTCATTTGCAGCAGCTCTTTCTGGCATCTCAAAGCCCTTTTTTGGATACTTCATCATAACAATAGGAGTAGCCTATTACAAGGAAGACGCAAAGCAACGAGTTGGATTGTATTCAATCCTCTTCTCTCTAATAGGGCTGCTTTCATTATTCACTCACACCTTGCAGCATTACTTCTTTGGAGTAATTGGAGAGAAGGCCATGACTAACCTTAGACAAGCCCTGTATTCAGGCATACTAAACAATGAATTAGCGTGGTTCGAGAAACCTGAGAATAATGTTGGCTCACTTACCTCACGGATCATCAATGATACCTCAACGGTCAAAACCATAATCTCGGATCGTATGTCTGTTATCGTCCAATGTATCTCCTCCATACTGATTGCAACAATAGTAACCATGAAACTTAACTGGAGAATGGGTCTTGTAGCTTGGGCTGTGATGCCTTGCCACTTCATTGGTGGCCTGATTCAAGCCAAGTTTGCCAAAGGATTTTCAAGTGGCTCTGCTGCTGCACATTGTGAACTTGTTGCCCTTGCTTCTGAATCTGCAACCAACATGAAAACAATTGCCTCATTTTGTCATGAAGATTTCATACTTGACAAAGCCAAAATTGCTTTGGAACCTCCAATGAGAAAGAGCAGGAGAGCAAGCATCAAGTATGGGATCATTCAAGGCTTCTCACTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTATACAGCAGTTTTGGTGGAAAGAGATCAAGCTACTTTTGAGAATGGTATAAGATCGTACCAGATTTTCTCCCTCACTGTGCCTTCAATCACAGAACTGTGGACACTGATCCCCACAGTCATCTCCGCCATCAGTATTCTAACTCCTACATTCAAAACCCTTGACCGGAAAACTGAAATTGAACCGGATACACCAGAGAATTCACATGCTGAGAAGATCAAAGGGCGAATCGAATTTCAAAATGTTAGTTTTAATTACCCACTAAGACCAGAAGTGACTGTTCTCAACAACTTCTGCTTACAAATTGAAGCTGGATCAAAAGTGGCTCTTGTGGGGCCAAGTGGAGCCGGAAAATCCTCAGTTTTGGCCCTTATACTGAGATTCTATGATCCTAGGGCAGGAAGGATACTGATTGACAGAAAGGATATAAGGAATTACAATCTAAGAAGATTGAGGTCACGGATAGGATTGGTACAGCAAGAGCCTCTGCTTTTCAGCTCCTCAATCAGAGATAACATCTGCTATGGGAATGATGGAGCTTCTGAAACTGAAATTATAGAGGTAGCAAGGGAAGCACGGATACATGAGTTCATAAGTAATTTGTCTCATGGATATGATACAGTTGTGGGGCAGAAGGGCTGCCAACTTTCTGGAGGACAAAAGCAGAGAATAGCCATTGCTAGAACTCTACTAAAGAGGCCAGCAATTTTACTCCTGGATGAAGCAACAAGTGCCCTTGATACTCAGTCTGAAAGAGCTGTAGTGAGTGCTCTGGAATCAACAAAACTGAACAACAATGGTGACTTATCCAGAACCACACAGATCACTGTTGCACATAGGCTTTCCACGGTGATCAACTCAGATACCATAATAGTTATGGACAAAGGTGAGATTGTGGAGATGGGTCCTCACTCAACCCTGATAGCAGTATCTGATGGGCTTTACTCCAAATTGGTCCAGCTCCAGAGTTTGGGAGAGAATTAA 3726 0.4351 MDVKKKKKTEGDGDTAMGEEALPFHKLLSYADGLDWVLMALGTLGSIVHGLAQPVGYLLLGKALDAYGTNIKDPEAMVDALYKVVPYVWYMAAAMFPAGILEVGCWMHASERQVSRLRLAFLRAALNQEIGAFDTDLTSGKIISGISSHMSIIQDAIGEKLGHFLSNIATCFSGILIAAICCWEVSLLTLLVVPLVLVTGATYSKKMNAISAAKMHFLSEATSMIEQTLSQIKTVFAFVGESTAAKSFSECMDKQFRISKREAIIKGVGTGLFQTVTTCCWALIIWVGAIVVTAKRSSGGDIIAAVMSILFGAISLTYAAPDIQIFNSAKAAGNEVFQVIKRKPAISYDSEGKTLEKINGNIDMQDVYFTYPSRKERLILDGFSFSIPAGKVVALVGSSGCGKSTVISLVARFYDPSQGEILIDNYNIKDLDLKFLRKNIGAVFQEPSLFSGTIKDNIKVGSMEADDQEVQNVALMANAHSFITQLPDQYSTEVGERGVQLSGGQKQRIAIARAIIKNPPILLLDEATSALDSESEKLVQAAIEKAMQGRTVILIAHRMSTVINADMIAVIENGQVKETGTHSDLLDTSNFYNNLFNMQNLCPDQGSRVTDLTEENASTDQEISFQDLDQSEEPNKHPRDALKEEEQRVRGKRVQFFRIWFGLKKSELIKTAIGSFAAALSGISKPFFGYFIITIGVAYYKEDAKQRVGLYSILFSLIGLLSLFTHTLQHYFFGVIGEKAMTNLRQALYSGILNNELAWFEKPENNVGSLTSRIINDTSTVKTIISDRMSVIVQCISSILIATIVTMKLNWRMGLVAWAVMPCHFIGGLIQAKFAKGFSSGSAAAHCELVALASESATNMKTIASFCHEDFILDKAKIALEPPMRKSRRASIKYGIIQGFSLCLWNIAHAVALWYTAVLVERDQATFENGIRSYQIFSLTVPSITELWTLIPTVISAISILTPTFKTLDRKTEIEPDTPENSHAEKIKGRIEFQNVSFNYPLRPEVTVLNNFCLQIEAGSKVALVGPSGAGKSSVLALILRFYDPRAGRILIDRKDIRNYNLRRLRSRIGLVQQEPLLFSSSIRDNICYGNDGASETEIIEVAREARIHEFISNLSHGYDTVVGQKGCQLSGGQKQRIAIARTLLKRPAILLLDEATSALDTQSERAVVSALESTKLNNNGDLSRTTQITVAHRLSTVINSDTIIVMDKGEIVEMGPHSTLIAVSDGLYSKLVQLQSLGEN* 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1228 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 991 1234 IPR003439 GO:0005524
Vvi16g1228 1241 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Vvi16g1228 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1228 1241 FunFam ABC multidrug transporter mdr4 989 1238 - -
Vvi16g1228 1241 Coils Coil 524 544 - -
Vvi16g1228 1241 Gene3D - 981 1240 IPR027417 -
Vvi16g1228 1241 CDD ABC_MTABC3_MDL1_MDL2 991 1236 - -
Vvi16g1228 1241 MobiDBLite consensus disorder prediction 627 646 - -
Vvi16g1228 1241 Gene3D ABC transporter type 1, transmembrane domain 26 941 IPR036640 GO:0005524|GO:0016020
Vvi16g1228 1241 SUPERFAMILY ABC transporter transmembrane region 25 344 IPR036640 GO:0005524|GO:0016020
Vvi16g1228 1241 PANTHER ABC TRANSPORTER B FAMILY 6 598 IPR039421 -
Vvi16g1228 1241 CDD ABC_MTABC3_MDL1_MDL2 362 599 - -
Vvi16g1228 1241 Pfam ABC transporter 1009 1158 IPR003439 GO:0005524
Vvi16g1228 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 983 1236 IPR027417 -
Vvi16g1228 1241 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 956 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1228 1241 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Vvi16g1228 1241 MobiDBLite consensus disorder prediction 629 646 - -
Vvi16g1228 1241 ProSitePatterns ABC transporters family signature. 1130 1144 IPR017871 GO:0005524|GO:0016887
Vvi16g1228 1241 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Vvi16g1228 1241 Pfam ABC transporter transmembrane region 673 935 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1228 1241 Pfam ABC transporter transmembrane region 40 313 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g1228 1241 SMART AAA_5 1018 1211 IPR003593 GO:0016887
Vvi16g1228 1241 SMART AAA_5 389 575 IPR003593 GO:0016887
Vvi16g1228 1241 SUPERFAMILY ABC transporter transmembrane region 656 976 IPR036640 GO:0005524|GO:0016020
Vvi16g1228 1241 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Vvi16g1228 1241 CDD ABC_6TM_Pgp_ABCB1_D2_like 661 974 - -
Vvi16g1228 1241 FunFam ABC transporter B family member 4 352 606 - -
Vvi16g1228 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 599 IPR027417 -
Vvi16g1228 1241 Gene3D - 352 610 IPR027417 -
Vvi16g1228 1241 FunFam MDR-like ABC transporter 597 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1228 Vvi-Chr16 21004457 21010493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1228 3 1236 Calmodulin-binding Proteins AT2G36910 40.016 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1228 K05658 - vvi:100255500 2357.02