Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1217 ATGAAGGCTTTCGTCTCTTCCTTTTTGCTCTACACAGTCCTGTTGTGCATCCATCTATGGCGTCCCGTCACTGCCAGTAGCATGCAAAACGAAACAGATCGACTTGCGTTGATTGCTTTCAAGGATGGAATCACCCAGGATCCACTTGGGATGCTGAGTTCTTGGAATGACTCGCTCCACTTTTGCCGGTGGTCAGGAGTGTATTGCAGTCGCAGGCATGTCCACAGAGTCACCAAATTAAATCTCTTTTCTTATGGACTGGTGGGATCCCTCTCACCCCATATCGGGAACCTCACCTTTCTTAGAACAATAGTCCTCCAAAATAACAGCTTCCATGGCAAAGTGCCTTCTGAGATCGGTGGTTTGTTCCGCCTACAAGTTCTTGTTCTTAGCAACAATTCCTTTGAAGGAAAGGTCCCTACCAATCTGACATATTGCTCAGAGCTTAGGGTCCTTAATCTAATCGACAACAAGCTTGAAGGCAAAATCCCAGAAGAACTTGGCTCCCTCTCAAAATTGAAAGCTCTGGGTCTCACTAGGAACAATCTCACAGGAAAGATCCCAGCTTCACTCGGGAACCTCTCATCTCTCAGTCTTTTTTCTGCAATGTACAACAGTCTGGAAGGAAGCATTCCTGAGGAGATTGGTAGAACAAGTATAGATTGGCTTCACTTAGGTTTCAACAGATTAACAGGTACGATTCCATCTTCTCTGTACAATCTCTCAAACATGTATTACTTCCTAGTTGGAGCTAACCAACTAGAGGGAAGCCTTAGTCAGGATATGGGTGTTGCCTTTCCTCATCTCAGGATGCTAGTTCTTGCAGAAAACCGATTCACAGGGCCTGTTCCCGTTTCATTATCTAATGCTTCAATGCTTGAAGCTATCTATGCCCCTGATAACAGTTTCACTGGGCCAGTACCACCAAATTTGGGGAGGCTGCAAAATCTTCGAGATATAACCATGGGCTGGAATCAGTTGGGTTCTGCCGGAGGAGATGATTTGAGCTTCATTAATTCTCTAGCAAACTGCACTTGGTTACAAAGAATGTCTTTCAGCCGCAATTTTCTCAAAGGTCCTTTGGTTAGCACAATAGCTAATTTCTCGACCCAAATTTCTTTGATAGATCTGGGAATCAACCAGATTCATGGAACAATTCCTTCAGGAATCAAGAACCTGGTAAATCTAACATTCTTGAACTTGGCTAGGAATCATCTCACCGGGAGCATTCCTTCCAATATTGGAAAGCTCTATAAAATACAAGTACTACTTTTGCTTGGAAACAGACTCTCCGGAATAATACCATCCTCACTCGGTAACTTAACCTTGTTGAATAATCTTGATTTAAGCGGCAACAACTTGATGGGAGAAATACCTTCCAGTCTAGCAGCCTGTCAAATCCTAGCACAATTGAGACTTTCTAACAACAACCTTAATGGTTCAATCCCAACAGAACTTATGGGTCATTTCTCGCTTGTGGTCCTGCAATTGGGTGGCAACGCCTTTACGGGTTCGCTGCCATTGGAAGTTGGCCATATGATTAACCTTGAAGTGTTAGATGTCTCTGAAAGCAGATTATCAAGTGGTCTTCCAAACACTTTAGGTAACTGTGTGGTAATGCGGGATCTTCGACTTACTGGTAATTTCTTTGAAGGAGAGATTCCCACATCGCTGCAAACTCTTCGAGGTTTAGAATACTTGGATCTTTCTCGCAACAAATTTTCTGGTAGGATCCCGATGTTTCTTGGGGACCTTCCTTTCTTGACCTATTTGAACTTGTCTTTCAATGAACTTGAAGGAGAAGTACCCTCAGTCAAGGCCAATGTCACAATTTCAGTTGAAGGAAACTATAATCTTTGTGGAGGCGTTCCCAAGCTTCATCTTCCCATATGTGTCACCTCATCTACTGGCGAAAAGAGGAAGCGTCCTGCTGCCAAACTACTCGTTCCGGTAATCATTGGAATTACATCCTTGAGTTTGTTGGCTTTCTTCGTTATTATCCTTCTGAGAAGAAAAAAATCGAGGAATGATGTCTCTTACACACAATCATTCAACAATCAATTCCTAAGAATTTCATTCGCAGACCTCCATAAAGCTACTGAAGGCTTCTCCGAGTCCAATATGATCGGTGTTGGGAGCTACGGTTCTGTGTATAAAGGAATCCTTGATCAAAATGGAACAGCTATTGCAGTAAAGGTGTTCAATCTTCCCCGAGGAGCTTCCAAGAGCTTTATGTCCGAATGCAAGGCCTTGAGAAAAATCCGGCATAAGAATCTTGTCAAAGTCTTGAGTGCTTGCTCTAGCTTGGACTTTCAGGGTAATGATTTCAAGGCTCTTGTGTTTGAGTTGATGCCACAAGGGAATTTGGATGGATGGTTACATCCAGAAGTAAGAGAGGATGAACCCCAAAGGCTTACCCTTCTACAGAGACTGAATATCGCTATTGACGTTGCTTCAGCACTGGAGTATCTTCACACTCAATGTGATGACATTATTGTTCATAATGATCTTAAGCCCAGCAATGTTCTTCTTGACAATGATATGATGGGCCATATCGGTGATTTTGGTATTGCAAAGATCACTTCTGTTGTTTTCAGCACTACAATTGCTACTAGTGTTGGCACAGACCAAAATACCTCGAATGCAGTGAAAGGATCCATAGGCTACATTGCTCCAGAATATGGTGTGAGTGGCAAGGTGTCCACTGAGGGAGATGTGTATAGTTATGGAATCCTTTTATTGGAGATGTTTACCGGAAGAAGACCAACTGATAACAAGTTCCAAGATGGTCATACTCTTCATAGCTTCGTGAAAACGTCTTTGCCTGAGCGAGTCATGGAGGTCATAGATCAGCCTTTGCTTTTAGAGGCAGATGAAAGAGGTAAAATGAGGGAATGCATCATTGCAGTATTGCGAATCGGCATCACTTGTTCCATGGAATCACCAAAAGACCGAATGGAGATAGGTGACGCAGCCAATAAATTACACTCAATCAAGAACCTCTTCTTAAGGGAGGCGGGTCATGGATAG 3030 0.431 MKAFVSSFLLYTVLLCIHLWRPVTASSMQNETDRLALIAFKDGITQDPLGMLSSWNDSLHFCRWSGVYCSRRHVHRVTKLNLFSYGLVGSLSPHIGNLTFLRTIVLQNNSFHGKVPSEIGGLFRLQVLVLSNNSFEGKVPTNLTYCSELRVLNLIDNKLEGKIPEELGSLSKLKALGLTRNNLTGKIPASLGNLSSLSLFSAMYNSLEGSIPEEIGRTSIDWLHLGFNRLTGTIPSSLYNLSNMYYFLVGANQLEGSLSQDMGVAFPHLRMLVLAENRFTGPVPVSLSNASMLEAIYAPDNSFTGPVPPNLGRLQNLRDITMGWNQLGSAGGDDLSFINSLANCTWLQRMSFSRNFLKGPLVSTIANFSTQISLIDLGINQIHGTIPSGIKNLVNLTFLNLARNHLTGSIPSNIGKLYKIQVLLLLGNRLSGIIPSSLGNLTLLNNLDLSGNNLMGEIPSSLAACQILAQLRLSNNNLNGSIPTELMGHFSLVVLQLGGNAFTGSLPLEVGHMINLEVLDVSESRLSSGLPNTLGNCVVMRDLRLTGNFFEGEIPTSLQTLRGLEYLDLSRNKFSGRIPMFLGDLPFLTYLNLSFNELEGEVPSVKANVTISVEGNYNLCGGVPKLHLPICVTSSTGEKRKRPAAKLLVPVIIGITSLSLLAFFVIILLRRKKSRNDVSYTQSFNNQFLRISFADLHKATEGFSESNMIGVGSYGSVYKGILDQNGTAIAVKVFNLPRGASKSFMSECKALRKIRHKNLVKVLSACSSLDFQGNDFKALVFELMPQGNLDGWLHPEVREDEPQRLTLLQRLNIAIDVASALEYLHTQCDDIIVHNDLKPSNVLLDNDMMGHIGDFGIAKITSVVFSTTIATSVGTDQNTSNAVKGSIGYIAPEYGVSGKVSTEGDVYSYGILLLEMFTGRRPTDNKFQDGHTLHSFVKTSLPERVMEVIDQPLLLEADERGKMRECIIAVLRIGITCSMESPKDRMEIGDAANKLHSIKNLFLREAGHG* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1217 1009 SMART serkin_6 703 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1217 1009 Pfam Leucine rich repeat 124 183 IPR001611 GO:0005515
Vvi16g1217 1009 ProSiteProfiles Protein kinase domain profile. 703 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1217 1009 FunFam Leucine-rich repeat receptor-like protein kinase 30 189 - -
Vvi16g1217 1009 SUPERFAMILY L domain-like 370 620 - -
Vvi16g1217 1009 FunFam LRR receptor-like serine/threonine-protein kinase EFR 674 783 - -
Vvi16g1217 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 784 1007 - -
Vvi16g1217 1009 Gene3D Ribonuclease Inhibitor 202 336 IPR032675 -
Vvi16g1217 1009 Gene3D Ribonuclease Inhibitor 30 190 IPR032675 -
Vvi16g1217 1009 ProSitePatterns Protein kinases ATP-binding region signature. 709 732 IPR017441 GO:0005524
Vvi16g1217 1009 SMART LRR_typ_2 441 465 IPR003591 -
Vvi16g1217 1009 SMART LRR_typ_2 513 537 IPR003591 -
Vvi16g1217 1009 SMART LRR_typ_2 122 146 IPR003591 -
Vvi16g1217 1009 SMART LRR_typ_2 393 417 IPR003591 -
Vvi16g1217 1009 SMART LRR_typ_2 170 194 IPR003591 -
Vvi16g1217 1009 SMART LRR_typ_2 561 583 IPR003591 -
Vvi16g1217 1009 Gene3D Phosphorylase Kinase; domain 1 665 782 - -
Vvi16g1217 1009 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 222 997 - -
Vvi16g1217 1009 Gene3D Transferase(Phosphotransferase) domain 1 784 1005 - -
Vvi16g1217 1009 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vvi16g1217 1009 Gene3D Ribonuclease Inhibitor 337 639 IPR032675 -
Vvi16g1217 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Vvi16g1217 1009 Pfam Protein kinase domain 704 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1217 1009 FunFam LRR receptor-like serine/threonine-protein kinase EFR 333 637 - -
Vvi16g1217 1009 SUPERFAMILY Protein kinase-like (PK-like) 676 995 IPR011009 -
Vvi16g1217 1009 SUPERFAMILY L domain-like 29 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1217 Vvi-Chr16 20848483 20851612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1217 30 1006 Receptor kinase-like Gene Family AT3G47570 44.456 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi16g1217 Pkinase 6.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1217 - - vvi:100265904 1795.79