Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1216 ATGATTTACCTCGTCTATCATGTTGATGCAGATTTTAAGGCGTATTTACGTTGGTTTGCGCCAGCCATTCTGGAATCTGGAAGCCTACTCATTGGCCTTATTGTTGCATTGAGGACTTTGTTTGGGACTCCATGTGTGTTAATATTTTTGGTCTACAAATGGAGGAGGAGGAACTTATCCATGTACCAAGCCATTGAGGAGTTCATTCAGACTCACAATAAGCTAATGCCAATTAGGTACTCTTACTCAAACATTAAGAAGATGACCAAAGGTTTCAATGAAAAATTGGGCGAGGGTGGCTATGGTTCGGTATACAAAGGAAAGTTACGAAGTGGCCATTTGGTGGCTGTAAAATTGATGACCAATTCCAAATCTAATGGACAAGATTTCATCAATGAAGTTGCTACAATTGGAAAGATTCATCATGTTAATGTGGTACAACTACTTGGATTTTGTGTAGAGGGATCAAAGCGGGCTCTTGTGTATGACTTCATGCCTAATGGGTCACTTGACAAGTACATATTTCCTGAAAAAGAAGGAAATATCTCCTTGAGCTTTGAGAAAATGTATCAGATTTCGCTAGGAGTGGCTCATGGGATTGAATACTTACATCGAGGCTGTGACATGCAAATACTACATTTTGATATTAAACCTCACAACATTCTGCTTGATAAGAATTTCACTCCAAAGGTTTCAGACTTTGGCTTAGCAAAATCGTATCCAGTCGATCATAGCATTGTGTCTCTAACTGCAGCAAGAGGGACAATGGGCTACATGGCGCCAGAGCTGTTCTACAAAAACATTGGAGGAGTCTCATACAAAGCTGATGTCTATAGTTTTGGAATGCTATTGATGGAAATGGCAGGCAGAAGGAAGAACTTAAATGTGTTTGCGGAGCATTCTAGCCAAATTTACTTCCCTTCGTGGGCTTATGACCAGTTCAATGAAGGAAAGAACATAGAAATGGGAGATGCCACAGAAGAAGAACGGACACTTGCAAAAAAGATGGTTATAGTAGCCTTATGGTGCATACAGTTGAAGCCCAGCGATCGTCCTTCAATGCAAAAAGTTATAGAGATGCTTGAAGGAAATGTTGACCTACTGCAGATGCCTCCAAAGCCTTCTCTAACTCCTCAAGAGGTGCCAACTGAGGATCACAAAAACAACACAAACACAACAGAAATATCAATTACCATCAGTTAG 1203 0.404 MIYLVYHVDADFKAYLRWFAPAILESGSLLIGLIVALRTLFGTPCVLIFLVYKWRRRNLSMYQAIEEFIQTHNKLMPIRYSYSNIKKMTKGFNEKLGEGGYGSVYKGKLRSGHLVAVKLMTNSKSNGQDFINEVATIGKIHHVNVVQLLGFCVEGSKRALVYDFMPNGSLDKYIFPEKEGNISLSFEKMYQISLGVAHGIEYLHRGCDMQILHFDIKPHNILLDKNFTPKVSDFGLAKSYPVDHSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGRRKNLNVFAEHSSQIYFPSWAYDQFNEGKNIEMGDATEEERTLAKKMVIVALWCIQLKPSDRPSMQKVIEMLEGNVDLLQMPPKPSLTPQEVPTEDHKNNTNTTEISITIS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1216 400 Pfam Protein kinase domain 93 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1216 400 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Vvi16g1216 400 FunFam serine/threonine-protein kinase PBS1-like 60 164 - -
Vvi16g1216 400 Gene3D Phosphorylase Kinase; domain 1 64 164 - -
Vvi16g1216 400 Gene3D Transferase(Phosphotransferase) domain 1 165 369 - -
Vvi16g1216 400 PANTHER RUST RESISTANCE KINASE LR10-RELATED 62 381 IPR045874 GO:0004672
Vvi16g1216 400 SMART serkin_6 90 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1216 400 FunFam PR5-like receptor kinase 165 373 - -
Vvi16g1216 400 SUPERFAMILY Protein kinase-like (PK-like) 71 362 IPR011009 -
Vvi16g1216 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vvi16g1216 400 ProSiteProfiles Protein kinase domain profile. 90 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1216 400 MobiDBLite consensus disorder prediction 381 400 - -
Vvi16g1216 400 MobiDBLite consensus disorder prediction 369 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1216 Vvi-Chr16 20842191 20843745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1216 79 393 Receptor kinase-like Gene Family AT5G38280 51.393 4.18e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1216 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1216 - - vvi:100243578 780.785