Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1215 ATGTGTAATTCCTTGAAAATGGCACTCTGTCTGTCTTCCTTCTTGTTTGTTAGCATCTTTGCAGAGGTTGATGAGTGCAAGGAATCAAGATGCGCTGTCCAAGGTCCATCCATTCGGTTCCCATTCTGGCTTAAAGACCACCAGCCAGACCACTGTGGCTACCCTGGGTTTAAGCTATCATGCTCAGAGAAGAATCAGACCATGCTACACCTCTCACACTCAGTAAAACTTTTGGTGAGAAAGATAGATTACAAATCTCAGGAAATTCTTGTCCATGATCAAGATGATTGCCGTCTAACACAGTTTTTAATCCTCAATTTATCGTCATCTCCTTTCCATTTTCTACAAGAAAATCAAGTAGACTACAGTCTATTTAATTGTTCATCAACTAAAACAGACTCAGAGTTTCAGCCAGTCCCGTGCCTTAGTGTCCCCGCTTACCCAGTTTATGCTGTTACTTCCTGGGCTCTTATCCGTTACTTGAACCTATCTTCTTGCCTCAAGATTCACATCTCACTCCCATATCAAACGCTTGAGCCGGAAAATCTTTTTACTATGAATTGGGTGAAACCTATGTGCAAGAGCTGTGAAACAGAAGGCAAGAAATGCAGACTGAAGAAGAGTAGTAGCGAGGAACCTCACACAGAATGTATCAAAGGTGCATCAAAAACACCAATGGTCACAGGTGTAACGCTTGGTTCAATTTTTCTTATGCTTGGAGTCATTACGCTCTATCACAAGTATAGCTCAAACAAATTAGAAAGAGAAAATCAAATGAAGATTGAAAAATTCTTGGAAGATTACATAGCCCTCAAGCCGTCAAGATATTCTTATGTTGATGTTAAGAAAATTACCAATCAATTTAAGGATAAATTAGGAGAAGGGGGTTATGGGATTGTGTATAAAGGAACACTTTCTAACGAAGTTTTTGTTGCAGTCAAGATCCTTAAAAATTTCAAAGGAAATGGAGAAGAGTTTATCAATGAAGTCGAAACAATGGGTACGATCCACCATGTCAATGTGGTTCGCTTAGTTGGCTTTTGTGCTGATGGATTTAGGCGAGCTGTTATTTATGAGTACCTACCGAATGAGTCGCTAGAAAAGTTCATATTTTCAACAACCTTTAAAAACTATTCACTCAGTTGGGAAAAGCTTCAAAATATTGCTCTAGGTGTAGCAAAGGGAATTGAATATCTTCATCAAGGTTGTGATCAAAGAATCCTCCATTTTGATATTAAACCTCATAATATTTTACTTGATCACAATTTTAATCCAAAAATATCTGACTTTGGCCTAGCTAAATTGTGTTCTAAGGAACAAAGTGCAGTTTCTATGACTGCAGCAAGGGGAACCATGGGCTACATTGCTCCAGAAATGCTATCTAGGAATTTTGGGAATGTGTCCTATAAGTCAGATGTATATAGTTTTGGAATGTTATTACTTGAAATGGTAGGAGGAAGGAAGAATATTGATGTTACAGTGGAAAACAGTAGCCAAGCATACTTCCCAGAATGGATTTATAATCATTTGGATCAAGGAGAAGAATTGCATATTCGAATTGAGGAAGAAGGAGACACTCACATAGCAAGGAAATTGACAATTGTGGGACTTTGGTGCATTCAATGGTATCCTGTAGATCGTCCTTCTATGAAACTTGTGGTTCAAATGTTGGAAGGAGAAGGAGAAAGCTTACCCATGCCTCCAAACCCCTTCACTTGCACCCGGTGA 1728 0.3889 MCNSLKMALCLSSFLFVSIFAEVDECKESRCAVQGPSIRFPFWLKDHQPDHCGYPGFKLSCSEKNQTMLHLSHSVKLLVRKIDYKSQEILVHDQDDCRLTQFLILNLSSSPFHFLQENQVDYSLFNCSSTKTDSEFQPVPCLSVPAYPVYAVTSWALIRYLNLSSCLKIHISLPYQTLEPENLFTMNWVKPMCKSCETEGKKCRLKKSSSEEPHTECIKGASKTPMVTGVTLGSIFLMLGVITLYHKYSSNKLERENQMKIEKFLEDYIALKPSRYSYVDVKKITNQFKDKLGEGGYGIVYKGTLSNEVFVAVKILKNFKGNGEEFINEVETMGTIHHVNVVRLVGFCADGFRRAVIYEYLPNESLEKFIFSTTFKNYSLSWEKLQNIALGVAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTAARGTMGYIAPEMLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVTVENSSQAYFPEWIYNHLDQGEELHIRIEEEGDTHIARKLTIVGLWCIQWYPVDRPSMKLVVQMLEGEGESLPMPPNPFTCTR* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1215 575 Gene3D Phosphorylase Kinase; domain 1 259 360 - -
Vvi16g1215 575 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Vvi16g1215 575 FunFam PR5-like receptor kinase 361 568 - -
Vvi16g1215 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Vvi16g1215 575 ProSiteProfiles Protein kinase domain profile. 286 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1215 575 Gene3D Transferase(Phosphotransferase) domain 1 361 564 - -
Vvi16g1215 575 Pfam Protein kinase domain 288 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1215 575 FunFam serine/threonine-protein kinase PBS1-like 254 360 - -
Vvi16g1215 575 PANTHER RUST RESISTANCE KINASE LR10-RELATED 257 570 IPR045874 GO:0004672
Vvi16g1215 575 Pfam Wall-associated receptor kinase galacturonan-binding 26 93 IPR025287 GO:0030247
Vvi16g1215 575 SUPERFAMILY Protein kinase-like (PK-like) 269 558 IPR011009 -
Vvi16g1215 575 SMART serkin_6 286 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1215 Vvi-Chr16 20837574 20840184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1215 3 570 Receptor kinase-like Gene Family AT5G38260 38.389 3.10e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1215 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1215 - - vvi:100248716 1182.93