Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1214 ATGAACTGCACAAGGCCAATCAACGCTCATAACTACATTCAAATCACTCCTTGCGACAGCAACAATGGCAGTTCATTTTCTTCGGAAACATATGCTTATGCACTGGTGGGGGACTCCCTGAAGGTGAGGGACAATATTCAGTATTCATGCACCATTGGGTTGACTGTTATTACTCAAATACGGAAGGGGGTTTCAGAGCCCAGGAATCGTTCAATGTCAAATTTGCAAGAAAATCTGCTTATGGGGCTTGAGCTTTCATATTCGCCCGTCAACTGCAGCGACGCCTCACTCCACGAGCAAGTCGGGCAAAAAATTTTAGGGTTTCTGGTGTTTGCTTATAACATTCTGTTGTATCTTCTGGAGATAACCATAGGAGGAAGATCTGCATTGGGAATATTGTGTCTCATTGCCTACTTAATCTACAAGTTTCGTCGGAGACACTTATCGTTAGATGATAGTATTGAAGAATTCTTGCAAAAGCACAAAAATCTGCAGCCAATTAGGTACTCGTATTCAGAGATAAAGAAGATGACTGACAATTTCAAGACTTCACTAGGAAAAGGAGGTTTTGGCTCTGTATACAAAGGAAAACTTCAAAGTGGTAGCATTGTAGCTGTAAAAGTGTTAGCCACCTCTAAAGCTAATGGAGAAGATTTCATCAATGAAGTCGCTACTATCGGAAGGATTCATCATATGAATGTGGTTCGACTCATTGGATTTTGTGCAAATGGATCAAAATGGGCTCTTATATATGACTTCATGCCTAACGGGTCCCTTGATAAGTATATCTTTCTTAAAAGAGAAAATTCAGTTTATTTGAGTTGGGAGATGTTGTATAAGATTGCATTAGGCATCGCTAGAGGAATTGAATATTTGCATCGTGGTTGTGACATGCAAATTCTACACTTTGATATCAAGCCACATAACATTCTTCTTGATGAAGACTTTACACCAAAAGTTTCGGACTTTGGCCTTGCAAAATTATATTCAACAGATGAAAGTATTGTGTCTCTCACTGCAGCACGAGGAACATTGGGATATATTGCTCCTGAATTGTTTTATAAAAATATCGGAGGCATCTCTTATAAAGCTGATGTTTATAGTTTCGGAATGTTGTTAATGGAAATGGTTGGAAGAAGGAAGAATGTTCAAGCATTTGCTGAGCACTCAAGTCAAATATACTTTCCATCATGGGTTCATGATAAATATGATAGAGGAGAAAACATGGAAATGGGAGATGCTACTGAGGATGAAAAGAAATCAGTGAAGAAAATGGTATTAGTTGCACTATGGTGCATACAATTGAAGCCTACAGATCGTCCTTCAATGGGCAAAGCATTAGAGATGCTAGAAGGTGAAGTTGAACTCTTGCAAATGCCTCCCAAACCTACTTTATCCTATGAGGAAATGTCAATCGAGAACCAAATAAACAATCCAATAGGAGTACAACCAATTTCCTCATGTAATGCCATGGATACAATTAGTTTAGATGGAAGGTAA 1500 0.3873 MNCTRPINAHNYIQITPCDSNNGSSFSSETYAYALVGDSLKVRDNIQYSCTIGLTVITQIRKGVSEPRNRSMSNLQENLLMGLELSYSPVNCSDASLHEQVGQKILGFLVFAYNILLYLLEITIGGRSALGILCLIAYLIYKFRRRHLSLDDSIEEFLQKHKNLQPIRYSYSEIKKMTDNFKTSLGKGGFGSVYKGKLQSGSIVAVKVLATSKANGEDFINEVATIGRIHHMNVVRLIGFCANGSKWALIYDFMPNGSLDKYIFLKRENSVYLSWEMLYKIALGIARGIEYLHRGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTDESIVSLTAARGTLGYIAPELFYKNIGGISYKADVYSFGMLLMEMVGRRKNVQAFAEHSSQIYFPSWVHDKYDRGENMEMGDATEDEKKSVKKMVLVALWCIQLKPTDRPSMGKALEMLEGEVELLQMPPKPTLSYEEMSIENQINNPIGVQPISSCNAMDTISLDGR* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1214 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Vvi16g1214 499 SMART serkin_6 179 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1214 499 FunFam serine/threonine-protein kinase PBS1-like 149 253 - -
Vvi16g1214 499 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524
Vvi16g1214 499 FunFam PR5-like receptor kinase 254 462 - -
Vvi16g1214 499 Pfam Protein kinase domain 182 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1214 499 ProSiteProfiles Protein kinase domain profile. 179 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1214 499 CDD STKc_IRAK 185 452 - -
Vvi16g1214 499 Gene3D Transferase(Phosphotransferase) domain 1 254 469 - -
Vvi16g1214 499 PANTHER RUST RESISTANCE KINASE LR10-RELATED 152 469 IPR045874 GO:0004672
Vvi16g1214 499 SUPERFAMILY Protein kinase-like (PK-like) 158 451 IPR011009 -
Vvi16g1214 499 Gene3D Phosphorylase Kinase; domain 1 152 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1214 Vvi-Chr16 20829954 20833479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1214 117 466 Receptor kinase-like Gene Family AT4G18250 49.862 3.18e-117 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1214 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1214 - - vvi:100253816 765.763