Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1213 ATGAGTGCTCCCTTGAAAATTGTTGTCCTTTTACATTTTTTCTTGCTTGTCGTTGAAATTGATGCAGAGAATGGATTGAGCCAAGATCAGTGCACGGTACCAGCTAAATGCAGCCCTCAGGGTCCGCCCATTCGGTTCCCATTCAGGCTTAAAGGCCATCCAAAGAACTGCGGATGTCCGGGGTTTGAGTTGTCATGCACCGGAACTACTAATCAGACCATGCTAGAGCTGCCATTTCCAGCAAAGCTCCCGGTGGAGGAGATAAATTACACAACTCGAGAAATTCGCGTCCACTATAAGGATTCTTGCCTTCCCCGACAGCTTACGCGCAGTTTAGCTGACTCTCCCTTCAAATTAATGGATTTGGACCTTGTTGATGATCAGTACTACACCTTCTTCAGTTGTTCATTAAACAAATCAGAATCATATGATCTGACACCCTATACTTGCCATATTTTTGGTGGTAGCACAGTTTATGGTGTGAGTTCCGATGATGATCTTGGTGACTTGGATCTATACTCATGCCAGAGGATCGACAATGTTATAGTACAAAGTAATGTGGAAAATTCCTTTCATGTGAAGTGGGCAAACACAATATGTGGAGACTGCGAAGCAGAAGGTGGGAAATGCAGGCCCAAGAGTAATAGCATGAAACATGAAACAGAATGCATCCACAAACACCGCAAACCAGAAAAAGATGCACCAAGAATACCGGAGCTGGTTGCAGGAATAATCCTTGGTTTCCTTTTTCTTGGGTCAATAGCATTTGCACTCTACCATGTTTATAGCTTAGACAAATCACAAAGAGAAAATAGAAAGAAGATCGAAAAGTTTTTGGAAGATTATAGAGCTCTCAAGCCCTCGAGGTACTCGTACGCTGATATGAAGAAGATCACCCACCAGTTCAAGGATAAACTAGGCCAAGGAGCTTATGGAACTGTGTATAAAGGAAAGCTTTCAAATGAAGTTTTTGTTGCGGTAAAGATTCTCAATGACTCTAAGGGAAATGGGGATGAGTTTATCAATGAAGTGGCAACAATGGGCACAATCCACCATGTCCACGTGGTTCGCTTAGTTGGGTTTTGTGCAGATAGATTTAAACGAGCTCTCATCTATGAGTTCTTACCGAATGAGTCTCTAGAGAAGTTCATATTTCCAAAAAATGGGAAGAATCATTCACTTGGTTGGTTGAAGCTTCAAGATATTGCTTTAGGCATAGCCAAAGGAATTGAGTATCTTCACCAAGGATGTGATAAAAGAATTCTCCATTTTGATATTAAACCTCATAATATTTTGCTAGATCACAACTTTACTCCTAAGATCTCTGATTTTGGTCTAGCCAAATTGTGTTCCAAAGAGCAGAGTGTAGTTTCTATGACTACAGCTAGAGGGACGATTGGCTATATTGCACCAGAAGTGTTATCTAGGAATTTTGGGAATATAACCTATAAATCAGATGTTTATAGCTTTGGAATGTTGTTACTTGAAATGGTTGGAGGAAGAAAAAATATTGATGTTACAATGGAGAAAACTGGACAAGTATATTTTCCAGAATGGGTCTACAATCATTTAGATCAAGGGGAAGAGTTACATATCCGAATCGAGGAAGAAGGAGATGCTAAAATAGCAAAGAAACTAACAATTGTGGGACTTTGGTGCATTCAATGGTACCCAATAGATCGTCCTTCAATGAAAGCTGTAGTTCAAATGTTGGAAAGAGAAGACAATTTAATCATGCCTCCTAATCCTTTTACTGCTACAGATCGAATTATGGTCAAAGATCGAATGAGAATAAATACAAGCAAGCCACCAAGACCTCTTCCTGAAAAAGAGTTGGAAGTTATCACAGAATTAGAGTGA 1860 0.4005 MSAPLKIVVLLHFFLLVVEIDAENGLSQDQCTVPAKCSPQGPPIRFPFRLKGHPKNCGCPGFELSCTGTTNQTMLELPFPAKLPVEEINYTTREIRVHYKDSCLPRQLTRSLADSPFKLMDLDLVDDQYYTFFSCSLNKSESYDLTPYTCHIFGGSTVYGVSSDDDLGDLDLYSCQRIDNVIVQSNVENSFHVKWANTICGDCEAEGGKCRPKSNSMKHETECIHKHRKPEKDAPRIPELVAGIILGFLFLGSIAFALYHVYSLDKSQRENRKKIEKFLEDYRALKPSRYSYADMKKITHQFKDKLGQGAYGTVYKGKLSNEVFVAVKILNDSKGNGDEFINEVATMGTIHHVHVVRLVGFCADRFKRALIYEFLPNESLEKFIFPKNGKNHSLGWLKLQDIALGIAKGIEYLHQGCDKRILHFDIKPHNILLDHNFTPKISDFGLAKLCSKEQSVVSMTTARGTIGYIAPEVLSRNFGNITYKSDVYSFGMLLLEMVGGRKNIDVTMEKTGQVYFPEWVYNHLDQGEELHIRIEEEGDAKIAKKLTIVGLWCIQWYPIDRPSMKAVVQMLEREDNLIMPPNPFTATDRIMVKDRMRINTSKPPRPLPEKELEVITELE* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1213 619 Pfam Protein kinase domain 302 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1213 619 SMART serkin_6 300 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1213 619 Pfam Wall-associated receptor kinase galacturonan-binding 33 98 IPR025287 GO:0030247
Vvi16g1213 619 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Vvi16g1213 619 FunFam PR5-like receptor kinase 375 581 - -
Vvi16g1213 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Vvi16g1213 619 FunFam serine/threonine-protein kinase PBS1-like 267 374 - -
Vvi16g1213 619 PANTHER RUST RESISTANCE KINASE LR10-RELATED 271 589 IPR045874 GO:0004672
Vvi16g1213 619 ProSiteProfiles Protein kinase domain profile. 300 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1213 619 SUPERFAMILY Protein kinase-like (PK-like) 282 572 IPR011009 -
Vvi16g1213 619 Gene3D Phosphorylase Kinase; domain 1 273 374 - -
Vvi16g1213 619 Gene3D Transferase(Phosphotransferase) domain 1 375 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1213 Vvi-Chr16 20826879 20829051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1213 31 583 Receptor kinase-like Gene Family AT1G66910 36.808 1.15e-112 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1213 Pkinase 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1213 - - vvi:100258962 1260.36