Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1210 ATGATGTCCACCATAATGGAATATGACCTGGGAGCAGAAGGAGATCTGTTCAAAGCTCCGGAACCCATCATTGAAGAACCAGTCATGGGCCTTGATCCCATGACTGCAGCCATGTCGATGATACCTTGTGGGGAAGATGTCATCTCCCCACAAGGGCTCAAGGTCTCGGATATCGAATCAATTCAAAGTGAGCAGCTTTTGAGTGAGGTTTTCTATGAATGCAAGAAGGATCTCTTGGCTAAAACTGTAATAGAATCACCACTCTCTGAGGTCCTGGATATCAAGATTCCGGTTGCAAGGATGGGAGAGACTCAAGCTGCAGAGGAGAAAGCACTTTATGAAGGATTGTTCCAGAAAAGTGTCAGCTCGGGGTGTTTAAGCTCGATGGAGTGGGTCAATGGGACTGCCATGAGGCCGAACTTTCTGGACTTCCCTGGAATGGACTTTGGAGCTGCTTATGGGATGCGGAGGGCATTCAGTGACGGAGACATAAAGACACTCGGTAATGGCCAAATGAGCCTCATTCGAACTCCTCTCGACCATCCAGTTGTTGTCAGCAACTACACCCCCACTGAAGATCGGCAGAAAAAGCTTTCCAGATACAGGAACAAGAGGACCAAGAGGAACTTCGGCCGAAAAATCAAGTATGCTTGCAGGAAGGCGCTGGCTGACAGCCAACCAAGGATCCGCGGAAGGTTTGCGAAGACTGAAGAACTGGACATGACCAAGAGACAATGA 738 0.4878 MMSTIMEYDLGAEGDLFKAPEPIIEEPVMGLDPMTAAMSMIPCGEDVISPQGLKVSDIESIQSEQLLSEVFYECKKDLLAKTVIESPLSEVLDIKIPVARMGETQAAEEKALYEGLFQKSVSSGCLSSMEWVNGTAMRPNFLDFPGMDFGAAYGMRRAFSDGDIKTLGNGQMSLIRTPLDHPVVVSNYTPTEDRQKKLSRYRNKRTKRNFGRKIKYACRKALADSQPRIRGRFAKTEELDMTKRQ* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1210 245 ProSiteProfiles CCT domain profile. 194 236 IPR010402 GO:0005515
Vvi16g1210 245 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 128 241 IPR045281 GO:0009909
Vvi16g1210 245 Pfam CCT motif 194 236 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1210 Vvi-Chr16 20787734 20791790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1210 92 245 C2C2-CO-like Transcription Factor Family AT5G15850 29.586 1.31e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi16g1210 CCT 7.5e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1210 - - vvi:100241849 486.878