Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1209 ATGATAATTAAGCGCAATTTGAAATCGAAAATGCCGAGTATGAAACGATGCAGACTCGGCCACTCGGCGGCGGACGACGATGAGTCGCCGGCGGCGAAGAAGAAGCGTAAGATGAATGGTTATTTCCCTCTGAATCTGCTCGGGGACGTCGCAGCGGGGATAATTCCGTTGAGCGGGTACGGCCTTCAACGGATATTCGGCGGTCACGTCGGAGATGACGGAGACGGCGTGGGAGCTATGAATCGTGCGGCTCAGGTTCACCGGCCGCCGCTGGTGAGGACGTCAAGGGGACGAGTTCAGGTACTCCCATCTCGATTCAACGATTCAATTCTTGATAATTGGAGGAAAGAGAGCAAACCCAATGCTCGTGAGATCATTCTAGATGAGGATTTCGAACCGGAAAAAGAAAAACCTTGTTCCAAAACCCCGAAACAGAGTGTGAAAAAGGGGCTAAATGAGGGTAAATTTGGACACCAATGTAGAAAATTCTCGGCATTGTGTCAAGAAGACGGAGATGAAATGGGGTATGTTGGGTTTAAGAATGTTGGTACCAAGAAGAAGTATTCCAGTTCGCGCAGTTCACTTACTTCTCTGCATGAGCAATTGGCAGAGGTCGAGCGGTATCCAACTGACGAAGTTGAGGAAAAGTTCGGTTTGGGAAGAGTCGATAGAGAGAGTAAAGGTGGTAGTAGGTTAGAGGAGTTTATTTCAGGTGATATAGTATGGGCGAAGTCGGGGAAGAAGGATCCTTTCTGGCCTGCCATTGTCATTGATCCAACCTCGCAAGCACCCGGGCAAGTTTTGAGTTCATGTATTGCTGGCGCAGTTTGTGTAATGTTCTTTGGCTATTCTGGAAATGGGAGTCGAGATTATGGGTGGATTAAGCGTGGGATGATATTTTCATTCATAGATAATGTAGAAAGGTTCCAGGGACAAAGTGACTTGAATGATTGTAAGCCCAGTGATTTTCGGACAGCTATAGAGGAGGCATTTCTTGCAGAAAATGGTTTTATTGAGAAGCTGACAGAGGATATAAATGTGGCTTCTGGGAAACCCAATTATCTTGAATCCACTAGAGGGATCCAAGAGGCTACTGGTTCGAATCAGGATCAAGAATGCGATTCTCAGGACCAGGCAAGTGGTGATGTATTTAGGAAGAAGGACACATGGTCTTGTGATGGCTGCGGCTTGAGAATTCCTCTTAAAAGTACAAAGAAAATGAAAGTTTTGACTCCTAAAGGCCGTTTTCTATGTAAAACCTGTGATAGGTTGTTAAAATCCAAACAGTATTGTGGCATATGCAAGAAGATGCAGAATCAATCAGACAGTGGGACTTGGGTGCGCTGTGATGGTTGCAAAGTTTGGGTGCATGCAGAGTGTGGTAAAATTTCCAGTAAACTTTTCAAGAATCTTGGGGCTACTGATTATTACTGCCCTGCTTGCAAAGCAAAGTTTAATTTTGAATTGTCAGATTCAGAAAGATGGCAGCCTAAAGTCAAATGCAACAAAAACAACAGTCAATTAGTGCTGCCTAACAAGGTTACAGTTACTTGCTCGGGTGTGGAAGGCATATATTTCCCAAGCATTCATTTAGTTGTGTGCAAGTGTGGGTCATGCGGGATGGAAAAGCAATCACTTACTGAATGGGAGCGTCACACAGGTTCCAAAGGGAAAAATTGGAAGACAAGTGTTAGGGTAAAAGGTTCCATGTTGTCATTGGAGCAATGGATGCTGCAGGTTGCAGAGTATCATGATAATAGTTTTCTTGCTGTTAACCCTCCTAAACGACCTTCTATAAGAGAACGAAGACAGAAGTTGCTTACTTTTTTGCAAGATACTTTAGAAGCTGCTGTCACCGATGAATCAACTGATTGCATTCCTACTTCCGTTGTGACAGAAAAATATGAGCCTGTTCATGCTAGGTGGACAACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATTATATGCAACAGATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGGGAGTGTTGCCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGAGCCTGCTGTTGGCATCTTGAGCATTCCATCAAATTCTTTTATAAAGATTTGCGTAATCTGTAAGCAAATACATGGTTCATGCACACAGTGTTGCAAGTGTTCTACTTACTACCATGCAATGTGTGCATCAAGGGCGGGGTATCGTATGGAGTTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAGGGCTCCAAATCCTGATACTGTTTTAATCATTCAAACTCCCCTAGGGGTTTTCTCTACCAAAAGCCTCATCCAAAATAAGAAGAAGTCCGGTTCAAGGTTAATTTCATCCAACAGGATAGAACTTCAACAGATTCCTACAGTGGAAACTGACGAGTTTGAGCCCTTCTCTGCTGCAAGGTGCCGGATTTTTAGAAGATCAAAATCAAACACTAAGAGGACAGTAGAAGAAGCCATTGCCCACCAAGTCAAGGGCCCCTTCCATCATTCTTTGAGTGCAATAGAAAGCTTGAATATATTCAGAGAAGTGGAAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCACTTGCAGAGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGGTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGTATTGCAGATATGAGGGAGGTGCGCTACCGATTAGAAGGAAAAGACTGCTATCTCTTTAAGATCAGTGAAGAAGTGGTAGTCGATGCTACAGATAAAGGAAACATTGCCCGCCTAATCAACCACTCGTGTGCCCCCAACTGCTATGCAAGGATCATGAGTGTGGGTGACGATGAGAGCAGGATTGTTCTTATTGCTAAGACCAATGTCGCTGCTGGCGATGAGCTAACGTATGACTACTTGTTTGATCCCGATGAGCCGGACGAATGCAAGGTCCCCTGTTTGTGTAAAGCTCCAAACTGCAGAAAATTCATGAATTAG 3240 0.4395 MIIKRNLKSKMPSMKRCRLGHSAADDDESPAAKKKRKMNGYFPLNLLGDVAAGIIPLSGYGLQRIFGGHVGDDGDGVGAMNRAAQVHRPPLVRTSRGRVQVLPSRFNDSILDNWRKESKPNAREIILDEDFEPEKEKPCSKTPKQSVKKGLNEGKFGHQCRKFSALCQEDGDEMGYVGFKNVGTKKKYSSSRSSLTSLHEQLAEVERYPTDEVEEKFGLGRVDRESKGGSRLEEFISGDIVWAKSGKKDPFWPAIVIDPTSQAPGQVLSSCIAGAVCVMFFGYSGNGSRDYGWIKRGMIFSFIDNVERFQGQSDLNDCKPSDFRTAIEEAFLAENGFIEKLTEDINVASGKPNYLESTRGIQEATGSNQDQECDSQDQASGDVFRKKDTWSCDGCGLRIPLKSTKKMKVLTPKGRFLCKTCDRLLKSKQYCGICKKMQNQSDSGTWVRCDGCKVWVHAECGKISSKLFKNLGATDYYCPACKAKFNFELSDSERWQPKVKCNKNNSQLVLPNKVTVTCSGVEGIYFPSIHLVVCKCGSCGMEKQSLTEWERHTGSKGKNWKTSVRVKGSMLSLEQWMLQVAEYHDNSFLAVNPPKRPSIRERRQKLLTFLQDTLEAAVTDESTDCIPTSVVTEKYEPVHARWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCRACETPDVERECCLCPVKGGALKPTDIETLWVHVTCAWFQPEVSFSSDEKMEPAVGILSIPSNSFIKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHSLVKNGRQITKMVSYCAYHRAPNPDTVLIIQTPLGVFSTKSLIQNKKKSGSRLISSNRIELQQIPTVETDEFEPFSAARCRIFRRSKSNTKRTVEEAIAHQVKGPFHHSLSAIESLNIFREVEEPKNFSTFRERLYHLQRTENDRVCFGRSGIHGWGLFARQAIQEGDMVLEYRGEQVRRSIADMREVRYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCAPNCYARIMSVGDDESRIVLIAKTNVAAGDELTYDYLFDPDEPDECKVPCLCKAPNCRKFMN* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1209 1079 MobiDBLite consensus disorder prediction 1 15 - -
Vvi16g1209 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 485 IPR013083 -
Vvi16g1209 1079 CDD PHD_ATX3_4_5_like 646 692 IPR042011 -
Vvi16g1209 1079 SMART PHD_3 757 813 IPR001965 -
Vvi16g1209 1079 SMART PHD_3 430 482 IPR001965 -
Vvi16g1209 1079 SMART PHD_3 646 693 IPR001965 -
Vvi16g1209 1079 SUPERFAMILY SET domain 925 1079 IPR046341 -
Vvi16g1209 1079 SMART set_7 937 1060 IPR001214 GO:0005515
Vvi16g1209 1079 SUPERFAMILY FYVE/PHD zinc finger 644 709 IPR011011 -
Vvi16g1209 1079 PANTHER PHD FINGER PROTEINS 84 496 - -
Vvi16g1209 1079 Pfam PHD-zinc-finger like domain 700 812 - -
Vvi16g1209 1079 Pfam PHD-finger 659 693 - -
Vvi16g1209 1079 MobiDBLite consensus disorder prediction 19 33 - -
Vvi16g1209 1079 FunFam Histone-lysine N-methyltransferase 696 815 - -
Vvi16g1209 1079 Pfam PWWP domain 238 331 IPR000313 -
Vvi16g1209 1079 Pfam PHD-finger 430 483 IPR019787 -
Vvi16g1209 1079 SUPERFAMILY FYVE/PHD zinc finger 428 487 IPR011011 -
Vvi16g1209 1079 CDD ePHD_ATX3_4_5_like 701 812 IPR041955 -
Vvi16g1209 1079 MobiDBLite consensus disorder prediction 1 33 - -
Vvi16g1209 1079 ProSiteProfiles SET domain profile. 937 1054 IPR001214 GO:0005515
Vvi16g1209 1079 CDD SET_SETD1-like 924 1075 - -
Vvi16g1209 1079 ProSiteProfiles PWWP domain profile. 237 305 IPR000313 -
Vvi16g1209 1079 ProSitePatterns Zinc finger PHD-type signature. 647 692 IPR019786 -
Vvi16g1209 1079 Gene3D SET domain 872 1079 IPR046341 -
Vvi16g1209 1079 FunFam Histone-lysine N-methyltransferase 634 695 - -
Vvi16g1209 1079 Pfam SET domain 948 1053 IPR001214 GO:0005515
Vvi16g1209 1079 CDD PHD_TCF19_like 431 481 - -
Vvi16g1209 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 695 IPR013083 -
Vvi16g1209 1079 ProSiteProfiles Zinc finger PHD-type profile. 644 695 IPR019787 -
Vvi16g1209 1079 ProSiteProfiles Zinc finger PHD-type profile. 428 484 IPR019787 -
Vvi16g1209 1079 ProSiteProfiles Extended PHD (ePHD) domain profile. 698 813 IPR034732 -
Vvi16g1209 1079 ProSiteProfiles Post-SET domain profile. 1063 1079 IPR003616 -
Vvi16g1209 1079 CDD PWWP_AtATX3-like 237 337 - -
Vvi16g1209 1079 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1079 IPR025780 -
Vvi16g1209 1079 Gene3D - 229 344 - -
Vvi16g1209 1079 FunFam Histone-lysine N-methyltransferase 912 1079 - -
Vvi16g1209 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 815 IPR013083 -
Vvi16g1209 1079 SUPERFAMILY Tudor/PWWP/MBT 235 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1209 Vvi-Chr16 20769859 20783861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1209 647 812 C2H2 Transcription Factor Family AT3G14740 32.370 3.67e-19 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi16g1209 zf-HC5HC2H_2 3.7e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1209 - - vvi:100246975 2150.17