Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1207 ATGGCTTTATGTGGGACTGGATTGAAATTGAGTTTGGAAAGCGTTGGAGTAGGGTATTATAGTAAAAATTCATCAACAAGACTGCTCAGATCTTCAGGTACTTCCTTGAACCAAAGGAAGCACAGTTCATTACAGCAGAAATGCTGGAGAGTAAGGTGTTCGTTGTCAAGAAAATCCACATTGCCAATGGAATCAGAAGATAATGTTCAAAGTGTTAGTTCAGTCTTGGTAGAGGAAGAATTGGAGCATGTTATTAAATTCAAGATCTCTGATTTTAAAATCAGTGATCGCGTTAGTGTTGGCCTTGGAGGACGGGCAGATGAGGTAGTTTTTGAAGCCACAGTGAAAGATTCACAAAGCCCTCTGAATGACACAAGGGTTGTGCTTAGGCAACTCATAAGTGCTCAAGCTAAGCGTAGAGGGAAACGTGCCATAGAGGTATTAAAGAGGCTAGTACGTCGTAGACTGATGTACCATTCATACTCCATGCAAGTTCATGGCTATGTCCCTTCACCAATGATTGGGGATGGTGGCTCATTTACCCTGGTTCACGGGTATCATGGTAGTTTTTCTTTAAGGCATTGGCTTCAACTTTCGGATTGGCTTCCAACCTTAGAAGCCACTCTTGCACTGGATGAGGAGTCTGTTAGGAGAGTGGGAGATGACACAGTTGGAGGACCTGCTGTGTCTCGACAACTGCGTCTTATACGAATTTTGATGAGGGATCTATTGATTGGAGTTAATTACTTGCACAGCCATGGACTTGCCCATACAGAGCTAAGGCTAGAGAATGTGCATATTTGTCCGGTGGATAGACATATTAAAGTAGGGATACTTGGAAATGCTGCTGATTTTTATGAGAGCAGTCAGAATAGTAGCACCCTGGACAGCAACATGGAGAGACGACAAATGATGATAGCATTTGACATGAGATGTGTTGGCTTCATGATGGCAAAAATGGTGTTGCGGGAACTGATGGATCCTACAATCTTTGCAAAGTTCAAATCATTCCTCACCAAGGGAAATGATCCTTCGTGCTTGCGGGAGTTTTTGTTGCAAATCCTCAATAGGAATTCCTCATCCGGAAATGCTGGGCTGCAGATACTAGATAGGAATTGGGGTGCAGGTTGGAATCTTCTATCTTCACTGCTTGCCACTAAATCTTCAAAGAGAATAAGTTGTTTAGACGCTTTAAGACACCCATTTCTGTGTGGACCAAGATGGCGAGTCAGCCCATCCATGGATATTATCAGATGGGGTCTTGGTTCTACAGCAGTTAGAATTTCGGAGGAATACATTTATCGCCTACCCCAGCGGACTAGGCTGGCGCATTTCATCGAATTAATGGAGATGCTGAATCCTTACTCAAAACCAAGGAATTGGCTGGAATTGCTGCCCGGAAAATGGCGGTTACTATACTCTACTGGGCGGCACATAGGTCTCACCCTCCGCCAGCCTTCCGCTCGAGTCCTCATCGGCGATGTCCACCTAACCGTCTCACGAACATCAACCCTCAACACCAACCTCTCGTTGACTTCAGACATCGGTTTCACAGTCATGGTAAACCAAAATTGGCCCCATGACAAGTCAGGGACGACTGGCAAACTGCAAGTGAATGCCATGTTCAGATTAACAGCCGGGAGACGACTGTATCTCAAGGAAGATAAAACCACAGGAAAGTTCCCTTCCCCCTCATCAACTTCCCAAAATTCTGTAATCCGAAAATTCTCAGGTAGGAAATGGAGGAAAGCAATCCCCTTTAAGGAGTTCCCGTCGACTCTCCCAGTGGCCAAATTCACCCCACATGACGTTGAGCTGACAATGAGTCTCGATGACCCATTGAGTACCAACGTCGACATTGCCAAAACCGTAGTCCGAGAAGTTAGGACACAAGTCCCACCCGAAATCTTTGATCTGTCGAAGATTGTTTGCGGAACGTATTTAGACCCCAGGCTGCTGGTCCTTCGTGGGGTGAGTGGATCAGCACTCCTCTTCACAAGGTCTTGTGAATGA 2013 0.4545 MALCGTGLKLSLESVGVGYYSKNSSTRLLRSSGTSLNQRKHSSLQQKCWRVRCSLSRKSTLPMESEDNVQSVSSVLVEEELEHVIKFKISDFKISDRVSVGLGGRADEVVFEATVKDSQSPLNDTRVVLRQLISAQAKRRGKRAIEVLKRLVRRRLMYHSYSMQVHGYVPSPMIGDGGSFTLVHGYHGSFSLRHWLQLSDWLPTLEATLALDEESVRRVGDDTVGGPAVSRQLRLIRILMRDLLIGVNYLHSHGLAHTELRLENVHICPVDRHIKVGILGNAADFYESSQNSSTLDSNMERRQMMIAFDMRCVGFMMAKMVLRELMDPTIFAKFKSFLTKGNDPSCLREFLLQILNRNSSSGNAGLQILDRNWGAGWNLLSSLLATKSSKRISCLDALRHPFLCGPRWRVSPSMDIIRWGLGSTAVRISEEYIYRLPQRTRLAHFIELMEMLNPYSKPRNWLELLPGKWRLLYSTGRHIGLTLRQPSARVLIGDVHLTVSRTSTLNTNLSLTSDIGFTVMVNQNWPHDKSGTTGKLQVNAMFRLTAGRRLYLKEDKTTGKFPSPSSTSQNSVIRKFSGRKWRKAIPFKEFPSTLPVAKFTPHDVELTMSLDDPLSTNVDIAKTVVREVRTQVPPEIFDLSKIVCGTYLDPRLLVLRGVSGSALLFTRSCE* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1207 670 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 401 649 - -
Vvi16g1207 670 FunFam OBP3-responsive gene 1 228 405 - -
Vvi16g1207 670 SUPERFAMILY Protein kinase-like (PK-like) 109 418 IPR011009 -
Vvi16g1207 670 SMART serkin_6 92 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1207 670 Gene3D Transferase(Phosphotransferase) domain 1 228 405 - -
Vvi16g1207 670 ProSiteProfiles Protein kinase domain profile. 92 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1207 670 Pfam PAP_fibrillin 438 664 IPR006843 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vvi16g1207 PAP_fibrillin 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1207 - - vvi:100248606 1290.02