Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1206 ATGTCGTCGACTCTACTGGAAGTTACTCGAGCGGGTCACGAAGAAATCGAGCGGCTTGAGCGGCTCATAGTGAAGGATCTGCAGAACGAGCCGGCTTCGAGCAAGGACCGCCTATTTCAGAGCCACAGAGTTCGAAATATGATCGACACCATCACCATTACGACAGAGAAACTCATTGATATTTATGAAGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGCTTGGGGGTCAGACAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAATGAGGAGTACGAGGAGCTACTCAAAGAGGAACTGCGAATTGAGTTTCGTGGAGAGGAAGCCTTTGGACGTTATTTGGACCTGCATGAATTGTACAATGAATATATTAATTCAAAATTTGGGGAGCACATTGAGTACTCTGCTTATGTTGAAGTCTTTTCAGAACCACAAAAGATCCCTCGTAAGTTGAAGTTGACAAGGCAATATAGGGAGTATTTAGAGAATCTACTGGAGTATCTGATATATTTTTTCGAGCGGACAGAGCCATTGCAAGATCTCGATAGAATATTTACAAAGCTTGCAACCGATTTTGAAGAGCAATGGGCAAATGGAATGGTAGAGGGGTGGGAGAATGAGAGTCAAGAAAATGGGAATGTTCCAACTCAACATGCGGCAATTGATCTTGATTATTACAGTACAGTTGAAGAGGTGATGGAAGTGGGTCCTGAAATGTTAAAGGAGGCATTGGCTGCTCTAGGACTAAAGACAGGTGGTACTGTTCAGCAGCGTGCTGAGAGACTTTTCCTCACAAAGCACACACCTCTTGAGCAGTTGGACCAGAAGCATTTTGCCAAGGGTTCACGTCGATCAGAACAAAATGGTACTCCTGCTGCTCCAAAAGAAGCTGACAGTTCAAAAGAAATTGCCCTCCTAGAGGCGAAGTTGAGAAAGATATGTGAATTACTGTATGAGACTATCGTGCGAACAAAAGAAAATATCGAGAAGAAACAGGCTTTGACATATGAGGAAATGGAAGCAGAACGTGAAGAGGAAGAAGTACAAGCAGACACCGAAAGTGATGATGAGGAGCAGCAGATCTATAATCCTCTCAAGTTGCCAATGGGCTGGGATGGGAAGCCTATTCCTTACTGGTTGTATAAGCTTCATGGACTTGGGCAGGAATTCAAGTGTGAGATATGTGGGAATCACAGTTACTGGGGGCGTAGGGCTTTTGAGCGGCATTTTAAGGAATGGCGCCATCAGCATGGTATGCGTTGCCTCGGCATTCCCAATACCAAAAACTTCAATGAAATCACATCAATTAAGGAAGCAAAGGTACTGTGGGAGAGAATACAGGAACGGCAAGGACTGAACAAGTGGCGCCCAGATCTAGAAGAAGAGTATGAAGACAAAGAGGGCAACATCTACAACAAGAAGACCTATACCGATCTGCAGCGCCAAGGCCTGATCTAA 1530 0.4431 MSSTLLEVTRAGHEEIERLERLIVKDLQNEPASSKDRLFQSHRVRNMIDTITITTEKLIDIYEDKDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHQAARVVDANEEYEELLKEELRIEFRGEEAFGRYLDLHELYNEYINSKFGEHIEYSAYVEVFSEPQKIPRKLKLTRQYREYLENLLEYLIYFFERTEPLQDLDRIFTKLATDFEEQWANGMVEGWENESQENGNVPTQHAAIDLDYYSTVEEVMEVGPEMLKEALAALGLKTGGTVQQRAERLFLTKHTPLEQLDQKHFAKGSRRSEQNGTPAAPKEADSSKEIALLEAKLRKICELLYETIVRTKENIEKKQALTYEEMEAEREEEEVQADTESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNHSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIKEAKVLWERIQERQGLNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1206 509 PANTHER SPLICING FACTOR SF3A-RELATED 238 310 - -
Vvi16g1206 509 MobiDBLite consensus disorder prediction 363 382 - -
Vvi16g1206 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398|GO:0003723|GO:0005681
Vvi16g1206 509 Pfam Replication stress response SDE2 C-terminal 224 304 IPR025086 -
Vvi16g1206 509 MobiDBLite consensus disorder prediction 361 382 - -
Vvi16g1206 509 Coils Coil 349 380 - -
Vvi16g1206 509 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Vvi16g1206 509 Coils Coil 102 122 - -
Vvi16g1206 509 MobiDBLite consensus disorder prediction 301 323 - -
Vvi16g1206 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vvi16g1206 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 128 175 IPR031774 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1206 Vvi-Chr16 20709431 20726862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1206 1 509 C2H2 Transcription Factor Family AT5G06160 74.853 0.0 766