Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1200 ATGGACGCTATCCCTTTTTTGTTCTCCATCTTCCTCCTCTCAACCATGGCAGCCAACTCCCAAGCCTGCGAGAAATCCAGCTGCCACCGCAGTGAGCTCGAAATCCGATTCCCCTTCCGGCTAGAGGACCACCAGCCAGAGTCCTGCGGCTACCCAGGATTCGACCTATCGTGTGATGCCACCATGCAAACCATCCTTAAGTTGCCATCAGGAGAGTTCAGTGTTCAGGGCATAGACTATGGCACACAAGAAATATGGATCAATGATCCAAAGAATTGCCTCCCTCGACTAATCCTTTCACTTAATCTTTCGGGTTCTTCGTTTAGAGGCGTTTATTATCATAATTACTCCTTCTTTAAGTGCTCAGCAGACTATCGATTAGACTCAATTGCTTGCTTGAGTGATGATAATTATACCGTCTTTGCTACTGATTCTAGTAGAGTGATCAATTTCTTGTCACCAGTCTGTGATTTGATTAAATCAGTCATGGTGCCTGCTGAGCTGCCATTTTATGATCCGGTCTGGACCTCGGACCTCAGCAGTGACCTCCTGCTCAGCTGGGGTGCACCCCGGTGCGGAGATTGCGAGATGGAGGGTGGGCGGTGCGGCTTCAGGAGCAACTCCAGCCTGGAAATTGGATGCTTTGATGTTCCTAAACGTGGGCTGCCAAGGACTGCTCGCTATGCCATAACCGTGGGCGTTGGGATACCGGCCCTAATGTGCTTTGTTGGGCTGCTGTGCTTCCTCTGCGGTAGGGTTAAGGCCTTTGGTGGGAGACGCCGGCCCATAGCAGAGTTCACGTCTATGGTCACTCCTCAGCCCACTGCTGTCATGGGCCTCGATGGGCCCACCATAGAGTCCTACCCGAAAGTAGTCCTGGGAGAGAGCCGGCGCCTGCCCAAGCCCGACGACAACACTTGCTCAATATGCTTGTCGGAGTATCGGCCCAAGGAAACCCTAAAGATCATACCGGAATGCCAGCATTGCTTCCATTCTGAATGTATCGATGAGTGGCTTCACTTGAATGCATCTTGCCCAATCTGCAGGAATTCACCGGCGAAATCACCTCCGTCCCAGAGTCATGAAAATGGACCAAATTTCTAG 1104 0.5136 MDAIPFLFSIFLLSTMAANSQACEKSSCHRSELEIRFPFRLEDHQPESCGYPGFDLSCDATMQTILKLPSGEFSVQGIDYGTQEIWINDPKNCLPRLILSLNLSGSSFRGVYYHNYSFFKCSADYRLDSIACLSDDNYTVFATDSSRVINFLSPVCDLIKSVMVPAELPFYDPVWTSDLSSDLLLSWGAPRCGDCEMEGGRCGFRSNSSLEIGCFDVPKRGLPRTARYAITVGVGIPALMCFVGLLCFLCGRVKAFGGRRRPIAEFTSMVTPQPTAVMGLDGPTIESYPKVVLGESRRLPKPDDNTCSICLSEYRPKETLKIIPECQHCFHSECIDEWLHLNASCPICRNSPAKSPPSQSHENGPNF* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1200 367 Pfam Ring finger domain 305 349 IPR001841 -
Vvi16g1200 367 CDD RING-H2_EL5-like 307 349 - -
Vvi16g1200 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 353 IPR013083 -
Vvi16g1200 367 ProSiteProfiles Zinc finger RING-type profile. 307 349 IPR001841 -
Vvi16g1200 367 SMART ring_2 307 348 IPR001841 -
Vvi16g1200 367 Pfam Wall-associated receptor kinase galacturonan-binding 23 89 IPR025287 GO:0030247
Vvi16g1200 367 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 352 IPR046948 -
Vvi16g1200 367 SUPERFAMILY RING/U-box 299 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1200 Vvi-Chr16 20642143 20644650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1200 17 360 C3H Transcription Factor Family AT2G46495 41.783 6.47e-81 249