Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1199 ATGTTGAAGGAGGAAAGACTCGTGGGAGTAGGGCTCATAACGCTCCTCCATGTCAGCTTCCTTTCGATCTGTATTGCCAGTGAAAACCAGCCCTGTAGGCCTTCTTCTTGTGGGGATATTGCAAAAATCAGTGACCCTTTTCGATTAAAAGGTGATCCTTCTGGTTGTGGTGACCATCAGTATGAACTGGCATGCGAAAACAATCGTACTATAATAAACCTGAACCACAAGAAATACTATGTTGCGCAGATCAATTACCATAACTATACCATTCGGGTGGTGAATCCTGGCATAAAGAAGGGCAACTGTTTCTCCACTCCTCTGTATTCCCTGACAAGTCAACAATTGGGATATGGTGATCCATATTATTGGCGACATAAATGGGAAATCAATACAACAGTTTTGTTGAACTGCACAATCCCGGTCAATGATCATAACCTCATTCCTATTATTCATTGCAACACAAGTGGCAATTCCTCTTCCTCTCATACATATTCTTATGCACAAGTTGGAAACCCCAAGCTGAGAGATGTTCCATATTCATGCGCCATTGGTACAACTCTTTTTTATCGATCAGCTGCAGTTTCACAGCCCAGAAATCGTTCAATGTCAGACTTGCAAGACGAGCTGCTCATGGGAGTTGAGCTTTCATTTTTGCATTACCGCTGCAGCAGAGAATGCAATGTGCAGGGGCGATCCTGCCATCTGAATTACATTCAGAGTACTCTACAATGCAAAATTGTGCCCACAGTATGTGACTACCCAATCGGTTGCATCAAGCCAATCTGGCTGAGGCATTTGTTGTACCTGCTTGCTCTAATTTGTACAGCCATTTTATCAAATCAATTTCAAATCTTTGCTATCGTCATTGGAGGAAGAACTGTGCTCGGGATATTGTGCCTGTCTGCCTATGTAATCTATAGGTTTCGACGGAGACACTTATCCTTGGATGATAGTATTGAAGATTTCTTACAAAATCATAGAAATCTCCAGCCAATCAGGTACTCATACTCAGAGATAAAGAAGATTACTAATGGTTTTAAGGACAAATTAGGGCAGGGAGGCTTTGGTTCAGTATATAAAGGAAAACTCCGAAGTGGTTGTATTGTAGCAGTGAAGATGTTGGTCATGTCAAAAACTAATGGCCAGGATTTCATTAATGAAGTTGCTACAATTGGAAGGATTCATCATGTTAATGTCGTGCGGCTCATTGGATTTTGTGTAGAGGGACCCAAATGGGCTCTTATATATGATTTCATGCCTAATGGATCTCTTGATAAGTATATTTTCCCTGAAAGAAAAAATTCTGTTCCTTTGAGTTGGGAGATATTGTACAAGATTGCCCTTGGAGTGGGGCGAGGAATTGAATATTTACATCAAGGTTGTGACATGCAGATACTACATTTTGATATCAAGCCACACAACATTCTTCTTGATAAAACCTTCGCACCAAAAGTTTCAGATTTTGGCCTGGCAAAACTGTATTCAGTGAATCAAAGTATCGTCTCCCTCACTGCAGCACGAGGAACACTGGGATATATAGCTCCAGAACTATTCTACAAAAACATTGGTGGTGTCTCATACAAGGCTGACGTTTATAGTTTTGGAATGTTGTTGATGGAAATGGTGGGAAAAAAGAGGTATGTGAATGCACATAAAGACGACTCAAGTGAAATGTACTTCCCATCATGGATTTATGACCGAATCAACAAAGGAGAGGACATGGAAATGGGAGATGCAACTGAGGATGAAAAGAAATGTGTAAGGAAGATGGTGATTGTTGCGCTATGGTGTATACAGATGAAGCCTACAGACCGCCCTTCAATGAGCAAAGCACTGGAGATGTTGGAAGGTGACATCGAACTCTTGAAAATGCCTCCTAAGCCTACTCTATATTCCCAGAACAGGTCAATTGAGGATCATGGTAACAACCCAAATGGGATTCCAGCTTCCTCATGTAATGCCATGATCACAATTTCCTTGGATGGAAGGTAG 1995 0.413 MLKEERLVGVGLITLLHVSFLSICIASENQPCRPSSCGDIAKISDPFRLKGDPSGCGDHQYELACENNRTIINLNHKKYYVAQINYHNYTIRVVNPGIKKGNCFSTPLYSLTSQQLGYGDPYYWRHKWEINTTVLLNCTIPVNDHNLIPIIHCNTSGNSSSSHTYSYAQVGNPKLRDVPYSCAIGTTLFYRSAAVSQPRNRSMSDLQDELLMGVELSFLHYRCSRECNVQGRSCHLNYIQSTLQCKIVPTVCDYPIGCIKPIWLRHLLYLLALICTAILSNQFQIFAIVIGGRTVLGILCLSAYVIYRFRRRHLSLDDSIEDFLQNHRNLQPIRYSYSEIKKITNGFKDKLGQGGFGSVYKGKLRSGCIVAVKMLVMSKTNGQDFINEVATIGRIHHVNVVRLIGFCVEGPKWALIYDFMPNGSLDKYIFPERKNSVPLSWEILYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDKTFAPKVSDFGLAKLYSVNQSIVSLTAARGTLGYIAPELFYKNIGGVSYKADVYSFGMLLMEMVGKKRYVNAHKDDSSEMYFPSWIYDRINKGEDMEMGDATEDEKKCVRKMVIVALWCIQMKPTDRPSMSKALEMLEGDIELLKMPPKPTLYSQNRSIEDHGNNPNGIPASSCNAMITISLDGR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1199 664 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Vvi16g1199 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 317 633 IPR045874 GO:0004672
Vvi16g1199 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vvi16g1199 664 CDD STKc_IRAK 351 618 - -
Vvi16g1199 664 Gene3D Phosphorylase Kinase; domain 1 319 419 - -
Vvi16g1199 664 Pfam Protein kinase domain 348 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1199 664 FunFam PR5-like receptor kinase 420 628 - -
Vvi16g1199 664 Pfam Wall-associated receptor kinase galacturonan-binding 32 94 IPR025287 GO:0030247
Vvi16g1199 664 Gene3D Transferase(Phosphotransferase) domain 1 420 624 - -
Vvi16g1199 664 SMART serkin_6 345 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1199 664 SUPERFAMILY Protein kinase-like (PK-like) 323 617 IPR011009 -
Vvi16g1199 664 FunFam serine/threonine-protein kinase PBS1-like 315 419 - -
Vvi16g1199 664 ProSiteProfiles Protein kinase domain profile. 345 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1199 Vvi-Chr16 20638497 20641292 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1199 326 640 Receptor kinase-like Gene Family AT5G38280 53.086 1.50e-112 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1199 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1199 - - vvi:104882253 1356.27