Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1198 ATGTGTAGTTCCTCAATAATAATTCTCTCTTTATTTTCACTCTTGCCTGTGACAATACTAGCAGAGAATGCAGTGAGCCAAGGTGAGTGCATGGTATTGAGTAATTGCAGTGAACAGGGTCCACTGATACGTTTCCCATTCAGGCTCAAAGACCAGCCAGACCACTGTGGTTATCCCGGGTTCGAGTTGTCTTGCACAGAGAAGAAGCAGACTGTGCTAGATCTTCCATATTCAGTGAAGCTCTTGGTGAAGAAGATAGATTATACAACGCAGGAAATTCGCGTCCAGGACCCGGATAATTGCCTTCCAAGACAGCTTCAGAACCTCGATTTAGCTGGCTCCCCTTTCCAGTTTGAATTGGAAAATTCCTGGGATTACTTTAGGGACTTCACTTTTGTCAATTGTTCAGTGAATAAATCTGCAAATCAATACAATCTTCGTTCCATCCCTTGTCTTTCTGTTCCTGGTAACCTGGTTTATGCCATTCTTTCCAATGCTGATCTTGGTGATTTTGACCTATCCTCTTGCCGCAAAATCTACAACATCTCACTCCCATATCGGATGTCTAACAATTCTTTTCCCATGAGCTGGTCAAAATCGATATGTGGAAAATGTGAAGCAGAAGGTTCTATTGTAGGTTCCTTTCTTCTTGTGCTAGTAGTCATTGTACTCTACTATGTCTATACTAAAAATAAATCAAGAAAAGATCATCAAATGAAGATTGAAAAGTTTTTGGAAGATTACAAAGCTCTCAAGCCTTCAAGATACACCTATGCTGATATTAAGAAGATCACAAGTCATTTCAAGGACAAATTAGGCGAAGGTGGCTATGGAACAGTGTACAAAGGAAAGCTTTCGAATGAAATTCTTGTTGCAGTCAAGATCCTTAACAATTTTAAGGGAAACGGAGAAGAGTTCATTAATGAAGTTGGAACAATGGATAGAATCCACCATATCAATGTGGTTCGCTTGGTTGGCTTTTGTTCTGATGGGTTTAGACGAGCACTTATTTATGAGTTCTTACCAAATGAGTCACTAGAGAAGTTCATATTTTCAGCAGTTGATAAGAACCCATTACTGGGTTGGGAGAAGCTTCGAAGCATTGCTCTAGGCATAGCCAAAGGAATTGAGTATCTCCACCAAGGGTGTGATCAAAGGATCCTCCATTTTGACATCAAACCTCATAATATTTTGCTTGATCAAAATTTTAATCCAAAGATTTCTGATTTTGGTCTAGCCAAATTGTGTTCCAAGGAGCAAAGTGCAGTCTCTATGACTGCAGCTAGAGGGACTATGGGCTACATTGCACCAGAAATGTTATCTAGGAATTTTGGGAACGTGTCCTACAAGTCAGATGTCTATAGTTTTGGAATGTTACTACTTGAAATGGTCGGAGGGAGAAAGAACATTGATGTTACAGTAGAGAATCCCAGCGGAGTATACTTCCCAGAATGGGTCTATAATCATTTGGATCAAGGGAAAGAGCTGCAGATTCGGATTGAGGAAGAGGGCGATGCTAAAATAGCAAAAAAGCTAACAATCGTGGGACTTCGGTGCATTCAATGGTACCCAGTGGATCGTCCTACCATGAAAACCGTGGTTCAAATGTTAGAAGGAGAAGGAGACAATTTAACCATGCCTCCAAATCCTTTTTCATCTACAACTCCAACAAGTACAACTGCAAGCGGGCCACCAAGACCTCTTCAACAAGAGCTGGAAATCATCTCAGAACTAGAATGA 1740 0.4069 MCSSSIIILSLFSLLPVTILAENAVSQGECMVLSNCSEQGPLIRFPFRLKDQPDHCGYPGFELSCTEKKQTVLDLPYSVKLLVKKIDYTTQEIRVQDPDNCLPRQLQNLDLAGSPFQFELENSWDYFRDFTFVNCSVNKSANQYNLRSIPCLSVPGNLVYAILSNADLGDFDLSSCRKIYNISLPYRMSNNSFPMSWSKSICGKCEAEGSIVGSFLLVLVVIVLYYVYTKNKSRKDHQMKIEKFLEDYKALKPSRYTYADIKKITSHFKDKLGEGGYGTVYKGKLSNEILVAVKILNNFKGNGEEFINEVGTMDRIHHINVVRLVGFCSDGFRRALIYEFLPNESLEKFIFSAVDKNPLLGWEKLRSIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDQNFNPKISDFGLAKLCSKEQSAVSMTAARGTMGYIAPEMLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVTVENPSGVYFPEWVYNHLDQGKELQIRIEEEGDAKIAKKLTIVGLRCIQWYPVDRPTMKTVVQMLEGEGDNLTMPPNPFSSTTPTSTTASGPPRPLQQELEIISELE* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1198 579 Pfam Wall-associated receptor kinase galacturonan-binding 35 97 IPR025287 GO:0030247
Vvi16g1198 579 ProSitePatterns Protein kinases ATP-binding region signature. 272 294 IPR017441 GO:0005524
Vvi16g1198 579 PANTHER RUST RESISTANCE KINASE LR10-RELATED 236 555 IPR045874 GO:0004672
Vvi16g1198 579 FunFam PR5-like receptor kinase 341 548 - -
Vvi16g1198 579 Gene3D Transferase(Phosphotransferase) domain 1 341 545 - -
Vvi16g1198 579 MobiDBLite consensus disorder prediction 540 569 - -
Vvi16g1198 579 SMART serkin_6 266 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1198 579 Gene3D Phosphorylase Kinase; domain 1 238 340 - -
Vvi16g1198 579 CDD STKc_IRAK 272 539 - -
Vvi16g1198 579 MobiDBLite consensus disorder prediction 546 566 - -
Vvi16g1198 579 ProSiteProfiles Protein kinase domain profile. 266 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1198 579 FunFam S-receptor-like serine/threonine-protein kinase 232 340 - -
Vvi16g1198 579 Pfam Protein kinase domain 268 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1198 579 SUPERFAMILY Protein kinase-like (PK-like) 251 538 IPR011009 -
Vvi16g1198 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1198 Vvi-Chr16 20635238 20637727 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1198 212 559 Receptor kinase-like Gene Family AT1G66910 48.056 4.71e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1198 Pkinase 8.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1198 - - vvi:100250224 763.066