Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1196 ATGATCAGTGGAGTTTCCTTGAGAATGATGTTCTTCTTGTTCTTGTTTGTAACAATTTCCTTGGATGTTGCAGTGAGCCAGGACGACTGCTTAGTCTCAAGCAGCTGCAGCCACCAAGGTTCACTAATCCGGTTCCCGTTCAGGCTGAAAGGGCAGCCAGACCGCTGTGGGTATCCGGGGTTTGAGCTCTCATGTACAGAGAGGAACGAAACCATACTAGAGCTTCCACATTCAGCGAAGGTCCTGGTAAAGAATATCAGCTATGAGTCTCATGAAATGATGGTCCAAGACCCAGAAAAATGCCTTCCAAGACAGCTTCAGAACCTAAGTTTATCAGCCTCCCCCTTCAACTTCAAGCTCAGCAATCAGTGGGAAGCCCTATATGACTTCACCTTCTTCAACTGTTCATCAAAGAAAAGAGAAATGTCTTATGTCGATCCCATCCCTTGCCTTTCTCTCCCTGATTATCCAGTTTATGCTGTTATGTCCACTGCAAGTATTAGAGATGTGGACCTATCATCTTGCCAGAAGATGTACAACATCTCAGCAGTCCCATATCCGGTATCTGAGCTGAGCAAGGGTTTTTCTTTGAATTGGTCAAGCGAGATATGCAGAAACTGTGAAGAAAGCATGAAGTGCAGACTGAAGAGCAACAGCAAGGAGCCTGAAACTGAATGCATAGGAGAGCCAGCAACAGGTGCAGGAAAGAAAGTAGTGACTGCAGGTCCAATTATAGGTTTCTTTCTTCTTCTGGTGGCAGTCAGTGTGCTCTGA 774 0.4574 MISGVSLRMMFFLFLFVTISLDVAVSQDDCLVSSSCSHQGSLIRFPFRLKGQPDRCGYPGFELSCTERNETILELPHSAKVLVKNISYESHEMMVQDPEKCLPRQLQNLSLSASPFNFKLSNQWEALYDFTFFNCSSKKREMSYVDPIPCLSLPDYPVYAVMSTASIRDVDLSSCQKMYNISAVPYPVSELSKGFSLNWSSEICRNCEESMKCRLKSNSKEPETECIGEPATGAGKKVVTAGPIIGFFLLLVAVSVL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1196 257 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 238 IPR046948 -
Vvi16g1196 257 Pfam Wall-associated receptor kinase galacturonan-binding 33 97 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1196 Vvi-Chr16 20623720 20624649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1196 33 219 C3H Transcription Factor Family AT2G46495 34.314 3.25e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1196 - - vri:117933793 509.22