Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1195 ATGATGTTGAGGGAAGAAAAACTTGTGGCAGTTGGGCTGATAGCACTCCTCCATGTCTGCTTCATCTCAATCTGTGCTGCCGATGAAAACCAGACTTGCAGGCCTTCATCTTGTGGAGATATTCGAAATATCAGCAACCCTTTTCGGTTAAAGGGAGACCCATCCGGCTGTGGCGATCCTAACTATGAATTGGTTTGTGAAAATAATCGTACCATGTTGAACCTGTATAGTGGGAAATACTATGTTGCAGAGATCAACTACAAGAACTACAGCATTCGGATAGTGGATCCTGGGCTTGACAAGGGAGACTGTTTCTCCAGCCCTCTGTATTATTTGACAAGAGGAAACTTCAGTTATGGAGATCCATATGATTTGCCTTATGATTGGAAATTGAGTAGAACGGTTTTAATGAATTGTACAAGTTCAATCAGTGATCATAGCTACATTCGAATTAATCCCTGCAACTCCAGCAGCACTTCATTTTCATCACAGGCATATGTTTATGCGCTAGCAGGAGTTTCTGAGGTGGGAGACATCAAGTATTCATGCACAATAGGCATGACTATTTCTACTCGACCATTGAAGGAAGTTTCTTCAAAGCCCAGGAATCAATCAATGTCAGAATTGCAAGAAGAGCTTCTTGTGGGACTTGAGATTTCATTTCTGCCTTATCGCTGCAGCAGCGAATGCCATATGGAAGGGCAATCCTGCTATATGAATTTTATTGAAAATACAATTACATGTGTCTCCAACAGGGGATGCGGGGACTGGAGCAGTTGCTTAAAGCCAACTTGGCTAAGGAAATTCCTCTTTGACTTCCTGTTTCCTTTAATCGATGCCATATTTTCGGTTGAGCCCTCTCAAATCTTCAGTGTTAGAGATTTGCTCAACGATTTGCCGTTCAGTTTACTTGGCTGGATTATCCGAGTGATCCTTATAATTGTGGCTGGAAGAGCTGTGATTGGGATGCTATGCCTATGTGCCTTTCTGATTTACAAGTTTCAAAGGAGACACTTATCAATGGATGATACTCTTGAGGAATTCCTACAAAGTCATAACAATCTCCAGCCAATCAGGTACTCATATTCAGAAATAAAGAAGATGACTAATAATTTTCAAGATAAATTAGGTCAAGGAGGCTTTGGCTCGGTCTATAAAGGAAAGCTTCGAAGTGGCCAGATTGTAGCAGTAAAAATGTTGGTTGTGTCAAAATCTAATGGGCAGGACTTCATCAATGAAGTTGCTACAATTGGAAGGATTCATCATGTGAATGTGGTGCGACTCGTAGGGTTTTGCACGGAAAAATCAAAATATGCTCTTGTATATGACTTCATGGCAAATGGATCCCTTGATAAGTATGTTTTTCTCGAACGAGAAAATTCCATTCCTTTGAGCTGGGAGAGGTTGTATAACATTGCACTTGGAGTGGCTCATGGGATTGAATATTTACATCGTGGCTGTGAAATGCAAATTCTGCATTTTGATATCAAGCCACACAACATTCTTCTCGATGAAAACTTCACCCCAAAAGTTTCAGATTTTGGCCTTGCAAAACTGTATTCATCGGATCAAAATGCTGTCACTCTCACTGCAGCACGAGGAACGCTTGGATACATTGCTCCGGAACTGTTCTACAAAAACATTGGAGATGTCTCATATAAGGCCGATGTTTATAGTTTTGGAATGTTGTTGATGGAAATGATGGGGAAAAGGAAGTACATGAATGCCCGTGCTGAGAAAAGCGAAATATTCTTTCCATCATGGATTTATGACCGGATTGATCGAGGAGAAGACATGGAAATGGGAGAAGCCACTGAGGAAGAAAAGAAGTATATAAGGAAAATCATCATAGTTGCATTATGGTGTGTTCAAATGAAGCCCACTAACCGTCCTTCAATGAGCAAAGCACTGGAGATGCTGGAAAGTGAGGTAGAACTCTTGCAGATGCCTTCCAAGCCTACACTACATTCCAAGGATTTGTCAATGGAGGATGGTATGAACAATCCAATTGGGGCACCAGTTTCTTCATGCAATGGCACAATGACAATTAGCTTAGAAGGAAGGTAG 2067 0.4122 MMLREEKLVAVGLIALLHVCFISICAADENQTCRPSSCGDIRNISNPFRLKGDPSGCGDPNYELVCENNRTMLNLYSGKYYVAEINYKNYSIRIVDPGLDKGDCFSSPLYYLTRGNFSYGDPYDLPYDWKLSRTVLMNCTSSISDHSYIRINPCNSSSTSFSSQAYVYALAGVSEVGDIKYSCTIGMTISTRPLKEVSSKPRNQSMSELQEELLVGLEISFLPYRCSSECHMEGQSCYMNFIENTITCVSNRGCGDWSSCLKPTWLRKFLFDFLFPLIDAIFSVEPSQIFSVRDLLNDLPFSLLGWIIRVILIIVAGRAVIGMLCLCAFLIYKFQRRHLSMDDTLEEFLQSHNNLQPIRYSYSEIKKMTNNFQDKLGQGGFGSVYKGKLRSGQIVAVKMLVVSKSNGQDFINEVATIGRIHHVNVVRLVGFCTEKSKYALVYDFMANGSLDKYVFLERENSIPLSWERLYNIALGVAHGIEYLHRGCEMQILHFDIKPHNILLDENFTPKVSDFGLAKLYSSDQNAVTLTAARGTLGYIAPELFYKNIGDVSYKADVYSFGMLLMEMMGKRKYMNARAEKSEIFFPSWIYDRIDRGEDMEMGEATEEEKKYIRKIIIVALWCVQMKPTNRPSMSKALEMLESEVELLQMPSKPTLHSKDLSMEDGMNNPIGAPVSSCNGTMTISLEGR* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1195 688 SUPERFAMILY Protein kinase-like (PK-like) 348 641 IPR011009 -
Vvi16g1195 688 PANTHER RUST RESISTANCE KINASE LR10-RELATED 342 657 IPR045874 GO:0004672
Vvi16g1195 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Vvi16g1195 688 FunFam PR5-like receptor kinase 445 652 - -
Vvi16g1195 688 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Vvi16g1195 688 FunFam serine/threonine-protein kinase PBS1-like 339 444 - -
Vvi16g1195 688 SMART serkin_6 370 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1195 688 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Vvi16g1195 688 Pfam Protein kinase domain 373 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1195 688 Gene3D Transferase(Phosphotransferase) domain 1 445 651 - -
Vvi16g1195 688 ProSiteProfiles Protein kinase domain profile. 370 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1195 688 Gene3D Phosphorylase Kinase; domain 1 343 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1195 Vvi-Chr16 20618957 20622579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1195 359 668 Receptor kinase-like Gene Family AT5G38280 50.949 2.32e-108 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1195 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1195 - - vvi:104882255 1382.08