Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1194 ATGAGCGGTTCCTCAAAAATGGCATTCTCTTTGTTTTTCTTCCTGTCTGTAACAATCTTTTCAGAGATTGGATCCGGCCAAGATGAGTGCATGGCATCAAGGTGCAGTGACCAGGGTCCAACCATACGGTTCCCTTTCCGGCTAACAGACCAGCCAGACCACTGTGGATATCCAGGGTTTGAGTTATATTGCTCAGAGAAGAAACAGACCATGCTGGAGCTGCCATATTCAGTGAACCTCTTGGTGACGAATATCAGTTATGACTCCCACGAAATTATGGTCCAATATCCGTATAATTGCTTTGTAGGACAGCTTCAGAACCTCAGTTTAGCGGCTTCCCCTTTCCAGTTCAAACTAGAAAATGCCTGGGAAGTCCTAGATGACTTCACCTTCTTCAATTGTTCATCAAACAAAAGAGAATTCTATTTTGTTCAGTCCATCCCTTGCCTCTCTATTCCTGGTTACCCAGTTTATGCTATTATGTCCTCTGCTGATCTTGATGAAGTTAACCTATCCTCCTGCCGTAGGATGTACAATCTCACACTTCCGTATAGTATATCTGATCTGAATGGCAAATTCTCTATAAAGTGGTCAAAATCGGTATGTGGAAACTGTGAAGCACAAGGCAAGAAATGCAGACTGAAGAGAAACAGCAAGGAACCTGAAACCGAATGCATCAATAATCCATCAAAAGGTAGTGCAACAACAAAGTTGGTGGTTGCAGGTGCAGTCACTGGTTTCCTTCTTCTTGTCCTAGCTGTCAGTGTACTCTACTATCTGCACTGCTCACGAAAACTAGAAGAAAAGAATAAAAGAAAGATTGAAAAATTTCTGGAAGATTACAGAGCTCTAAAGCCCTCAAGGTATTCATATGCCGATATTAAGAAGATTACAGATCAGTTTAAGTACATACTGGGCCAAGGAGGTTATGGAACTGTGTACAAAGGGAAACTTTCTAATGAAGTACTTGTTGCGGTGAAGATCCTTAACAATTTCAGGGGAAATGGGGAAGAGTTCATTAATGAGATGGCAACAATGGGTAGAATCCACCATGTTAATGTGGTTCGCTTGGTCGGCTTTTGTGCTGATGGAATGAGACGAGCTCTCATCTTTGAGTTCTTACCAAATGATTCTCTTAACAAGTTCATATTTTCAGCTAAACATTCACTTGTTTGGGAGAAACTTCAAGATATTGCTATAGGCATAGCCAAAGGAATGGAGTATCTTCACCAAGGTTGTGAACAAAGAATCCTTCATTTTGACATCAAACCTCATAATATTTTGCTAGATCACAACTTTAATCCAAAGATTTCTGATTTTGGTCTAGCCAAATTATGTTCCAAGGACCAAAGTGCTGTTTCTATGACTATAGCTAGGGGGACTATGGGCTATATTGCTCCTGAAGTGTTATCCAGGAATTTTGGGAATGTGTCCTATAAGTCAGATGTTTATAGTTTTGGGATGTTGTTGCTTGAAATGGTTTCGGGGAGGAAAAACAGTGATGTCACAGCTGAGAACCCTAGCCAAGTATACTTCCCAGAATGGATTTATAACCATTTGAATCAAGGCGAAGAGCTGCACATCAGAATTATGGAAAACAGAGATGCCACAATAGCAAAGAAACTAGCAATTGTGGGACTCTGGTGCATTCAATGGTATCCAGTTGATCGTCCATCCATGAAACTTGTGGTTCAGATGTTAGAAGGAGAAGACAATTTAACCATGCCTCCAAATCCTTTTGCGTCTACAAGTCCAACAAATACAAAAACAAGTCAGTCAAGAACACCTCTTCAGAAAGAGCTTGCAGTCATCTCAGAATGA 1821 0.408 MSGSSKMAFSLFFFLSVTIFSEIGSGQDECMASRCSDQGPTIRFPFRLTDQPDHCGYPGFELYCSEKKQTMLELPYSVNLLVTNISYDSHEIMVQYPYNCFVGQLQNLSLAASPFQFKLENAWEVLDDFTFFNCSSNKREFYFVQSIPCLSIPGYPVYAIMSSADLDEVNLSSCRRMYNLTLPYSISDLNGKFSIKWSKSVCGNCEAQGKKCRLKRNSKEPETECINNPSKGSATTKLVVAGAVTGFLLLVLAVSVLYYLHCSRKLEEKNKRKIEKFLEDYRALKPSRYSYADIKKITDQFKYILGQGGYGTVYKGKLSNEVLVAVKILNNFRGNGEEFINEMATMGRIHHVNVVRLVGFCADGMRRALIFEFLPNDSLNKFIFSAKHSLVWEKLQDIAIGIAKGMEYLHQGCEQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKDQSAVSMTIARGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVSGRKNSDVTAENPSQVYFPEWIYNHLNQGEELHIRIMENRDATIAKKLAIVGLWCIQWYPVDRPSMKLVVQMLEGEDNLTMPPNPFASTSPTNTKTSQSRTPLQKELAVISE* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1194 606 MobiDBLite consensus disorder prediction 574 606 - -
Vvi16g1194 606 Pfam Wall-associated receptor kinase galacturonan-binding 30 94 IPR025287 GO:0030247
Vvi16g1194 606 FunFam S-receptor-like serine/threonine-protein kinase 267 373 - -
Vvi16g1194 606 SUPERFAMILY Protein kinase-like (PK-like) 281 568 IPR011009 -
Vvi16g1194 606 Gene3D Transferase(Phosphotransferase) domain 1 374 575 - -
Vvi16g1194 606 Gene3D Phosphorylase Kinase; domain 1 272 373 - -
Vvi16g1194 606 SMART serkin_6 299 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1194 606 MobiDBLite consensus disorder prediction 576 600 - -
Vvi16g1194 606 FunFam PR5-like receptor kinase 374 577 - -
Vvi16g1194 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Vvi16g1194 606 ProSiteProfiles Protein kinase domain profile. 299 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1194 606 PANTHER RUST RESISTANCE KINASE LR10-RELATED 269 586 IPR045874 GO:0004672
Vvi16g1194 606 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Vvi16g1194 606 Pfam Protein kinase domain 303 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1194 Vvi-Chr16 20615524 20618545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1194 11 579 Receptor kinase-like Gene Family AT5G38260 37.727 4.18e-110 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1194 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1194 - - vvi:100260698 1226.85