Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1193 ATGCAAGATGCTGTAAATTGTTTTCTGCTTCTGATTGCTATAATGATGGGAGCAAGAGGCGTGGTGGCAATAATGGGCCTGCTTACCCATTGGATCCACATGTTTCAAAGAAGATATTTATCATTGGATGATAGTATTGAAGAGTTCCTACGAAGGCACAAAAATCTCCAACCAATCAGATACTCGTATTCAGATATAAAAAGAATGACTAGTGGTTTTCAGAATAAATTAGGGCAAGGAGGATTCGGCACTGTATATAAAGGAAAGCTTCGGAATGGCCACATGGTAGCTGTAAAAATGTGCAATGTGTCAAAAGCTAATGGCCAAGATTTTATCAATGAAGTTGCAACAATCGGAAGGATTCATCATGCCAACGTAGTGCGACTCATTGGATTTTGTGTAGAGGGGTCAAAATGGGCCCTTTTATACGACTTTATGCCAAATGGTTCTCTTGATAAGGTTGTTTTTCTTGATCAAGAAAGGAGCACTCTTTTAAGTTGGGACAGATTGTACAAGATTGCTCTTGGAGTGGGACGTGGGATTGAATACTTACATCAAGGTTGTGATATGCAAATCCTGCATTTTGATATTAAACCACACAACATTCTTCTTGATCAAAATTTCAACCCAAAAGTGTCTGATTTTGGCCTTGCGAAATTGTATTCAACAGATAAAAATACTGTCACTTTCACCATAGCTAGAGGAACACTGGGATATATTGCTCCTGAATTATTTTACCAAAACATTGGAGGTGTCTCATATAAAGCCGATGTTTACAGTTTCGGAATGTTGCTATTGGAAATGGTGGGGAGAAGAAGAAATGTTAAGGTACATGCAGAGCACTCGAGTCAGATATATTTTTCATCATGGATTTATGACAAATTTCATCAAGAAAAGGATGTAGAAGTGAGAGATGCCACTGAAGATGAAAAGAGATTGATAAAGAAGATGGTGATAGTTGCACTATGGTGTATACAAATGAAGCCCACAGACCGTCCTTCTATGAGCAAAGCACTAGAAATGTTGGAAGGTGATGTTGAACTTCTGTCGATGCCTCTTAAGCCTACTGTACATCCCATGGAAATATCAGATGAGGATCGCATGAGTATTCCAATAGGGGTACCAATTTCCTCACGTAATGGCATGGATGCTGTTTCCTTAGATGGAAGTTAG 1173 0.3887 MQDAVNCFLLLIAIMMGARGVVAIMGLLTHWIHMFQRRYLSLDDSIEEFLRRHKNLQPIRYSYSDIKRMTSGFQNKLGQGGFGTVYKGKLRNGHMVAVKMCNVSKANGQDFINEVATIGRIHHANVVRLIGFCVEGSKWALLYDFMPNGSLDKVVFLDQERSTLLSWDRLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDQNFNPKVSDFGLAKLYSTDKNTVTFTIARGTLGYIAPELFYQNIGGVSYKADVYSFGMLLLEMVGRRRNVKVHAEHSSQIYFSSWIYDKFHQEKDVEVRDATEDEKRLIKKMVIVALWCIQMKPTDRPSMSKALEMLEGDVELLSMPLKPTVHPMEISDEDRMSIPIGVPISSRNGMDAVSLDGS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1193 390 ProSiteProfiles Protein kinase domain profile. 71 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1193 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Vvi16g1193 390 PANTHER RUST RESISTANCE KINASE LR10-RELATED 44 361 IPR045874 GO:0004672
Vvi16g1193 390 SUPERFAMILY Protein kinase-like (PK-like) 52 343 IPR011009 -
Vvi16g1193 390 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1193 390 Gene3D Transferase(Phosphotransferase) domain 1 146 350 - -
Vvi16g1193 390 FunFam PR5-like receptor kinase 146 354 - -
Vvi16g1193 390 SMART serkin_6 71 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1193 390 Gene3D Phosphorylase Kinase; domain 1 45 145 - -
Vvi16g1193 390 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Vvi16g1193 390 FunFam serine/threonine-protein kinase PBS1-like 41 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1193 Vvi-Chr16 20610401 20612125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1193 60 368 Receptor kinase-like Gene Family AT5G38280 49.363 1.40e-108 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1193 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1193 - - vvi:104882262 760.755