Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1192 ATGAGAAACAGCTTCCCTTTTTTAGCCCAGGATCCACTATCCAAATACTACGGTCTAATCTACCATGTGTATCGCAGAAATAAATCCAAAAAGGAGAATCAAATAAAGATTGAATCATTTTTAGAGGATTACAAGGCTCTCAAGCCCTCAAGATATAGTTATGTGGATATTAAGAAGATTACAAATAAATTTAAGGAGAAGCTTGGTGAAGGAGGTTATGGGACGGTCTACAAAGGAAAACTTTCCAATGATATTCTTGTTGCAGTTAAGGTTCTTAACAATTCCAAGGGAAATGGGGAAGAGTTCATTAATGAAGTGGGAACAATGGGTAGAATCCACCATATTAATGTGGTTCGCTTGGTTGGATTTTGTGCCGATGGATCTATACGAGCTCTTATTTATGAGTTCTTACCAAATGAGTCTTTAGAGAAGTTCATATTTTCAGTTGCTGGGGAGAATCATTCACTTGGTTGGGAGAAACTTCAACATATTGCTATAGGTATAGCCAAAGGAATTGAGTATCTTCACCAAGCTAGGGGTACTATTGGCTATATTGCACCAGAAGTGTTGTCTCGAAATTTTGGGAATGCATCTCATAAATCAGATGTTTATAGTTTTGGAATGCTATTACTTGAAATGGTAGGAGGAAGAAAGAATATTGATGCTACAGTTGAGAACACCGGTCAAGTATACTTCCCAGAGTGGGTTTATTGTCATTTGAATCAAGGGAAAGAGTTGAATATTCGAGCTGAGAAAGGGGGAGACACAAAAATAGCAAAGAAACTAACAATTGTGGGACTTTGGTGCATTCAATGGTATCCAATAGATCGTCCTTCGATGAAAGTAGCAGTTCAAATGTTGGAAGGAGAGGGAGATAATTTAACCATGCCTCCCAATCCTTTTGCCTCTTGGGTCCAACAAGAACAAATATGA 933 0.3794 MRNSFPFLAQDPLSKYYGLIYHVYRRNKSKKENQIKIESFLEDYKALKPSRYSYVDIKKITNKFKEKLGEGGYGTVYKGKLSNDILVAVKVLNNSKGNGEEFINEVGTMGRIHHINVVRLVGFCADGSIRALIYEFLPNESLEKFIFSVAGENHSLGWEKLQHIAIGIAKGIEYLHQARGTIGYIAPEVLSRNFGNASHKSDVYSFGMLLLEMVGGRKNIDATVENTGQVYFPEWVYCHLNQGKELNIRAEKGGDTKIAKKLTIVGLWCIQWYPIDRPSMKVAVQMLEGEGDNLTMPPNPFASWVQQEQI* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1192 310 SUPERFAMILY Protein kinase-like (PK-like) 46 288 IPR011009 -
Vvi16g1192 310 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Vvi16g1192 310 Gene3D Transferase(Phosphotransferase) domain 1 55 178 - -
Vvi16g1192 310 FunFam serine/threonine-protein kinase PBS1-like 27 136 - -
Vvi16g1192 310 Gene3D Transferase(Phosphotransferase) domain 1 179 299 - -
Vvi16g1192 310 PANTHER RUST RESISTANCE KINASE LR10-RELATED 33 177 IPR045874 GO:0004672
Vvi16g1192 310 Pfam Protein tyrosine and serine/threonine kinase 63 178 IPR001245 GO:0004672|GO:0006468
Vvi16g1192 310 Pfam Protein tyrosine and serine/threonine kinase 179 282 IPR001245 GO:0004672|GO:0006468
Vvi16g1192 310 ProSiteProfiles Protein kinase domain profile. 62 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1192 Vvi-Chr16 20602400 20605396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1192 30 300 Receptor kinase-like Gene Family AT1G66980 44.479 4.51e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1192 PK_Tyr_Ser-Thr 4.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1192 - - vvi:100241305 473.011