Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1191 ATGGATCGATATCTCTGTTTGTTTTTGTTCTTGTTTCTGACCTTGTTTGTGAAGATGAGAGGGGGCCGAGATGAGTGCATGACATCAAATCCTTGTGGCGACCAGGGTCCACTGATCCAGTTCCCTTTCCGTCTAAAAGACCAGCCACGCCACTGTGGATACCCGGGATTTGAGTTGTCTTGCACTGAGAATAATCAGACCATGCTAGAGTTGCCAGTTTCGGTAAAGCTCTTGGTGAAGAAAATAACTTACAAATCCCGGGAAATCATTGTCCAGGACCCGGATCATTGCCTTGCGAGACAGCTTCGAAACCTCAATTTAGCTGCCTCCCCCTTCCACTTCAAATTTGAACTGGACTTCACCTTCTTCACTTGTTCCTCATATAAAACTGCAGCACCCTTATTGAGGGCTTATACTTTTTTTGAGCACATCCCTTGCCTTTCTGTCCCAGGCAACTTAGTTTATGCTGTTTATTCCTCCATACCTCTCCGACTATTGGACCTATCCTCTTGCCGCAGGCTTTACAACGCTTCAGCTCCAGGTAATCGAGATTATGAGGATTATATGTTCAATGGAAGTGCATTTTCTTTGAAGTGGTCGAAATCAATATGTGGAAGCTGCCCAGGAGGAGGAAAAATATGCAGACTGAAGAAGAGTAATGGCGCGCAACCAGAAACTGAATGTATTAAAGGTGTATTGAAGAAAATAATTGTGACAGGTGCAATCTTTGGTTTCTTTCTTCTCATGTTAGTAATTGTTGCGCTTTATCGAGTCTATAGGTCAAATAAATTAGAAAGAGAGTATAGAATAAATGTTAAAAAGTTTTTGCAAGACTACGAAGCTCTCAAGCCCTCAAGATACTCCTATTCTGATATTAAAAGGATTACAAATCAATTCAAAGATAAATTAGGCCAAGGAGGTTATGGAATCGTGTACAAAGGAAAGCTTTCACATGAAGTTTTTGTTGCAGTAAAAATCCTTAACAATTCTCAGGGAAATGGGGAAGAGTTCATTAATGAAGTGGCAACAATGGGTACAATCCACCATGTCAATGTAGTTCGCTTAGTTGGATTTTGTGCTGATGGGTTTAAGCGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTAGAGAAGTTCATATTTTCAAGAGCTGTTAAGAACTATTCACTTAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCGAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAAAGAATCCTCCACTTTGATATCAAACCTCATAATATTTTACTTGATCACAACTTTAATCCAAAGATTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCAGTCTCTATGACAATTGCAAGGGGAACAATAGGCTACATTGCTCCAAAAGTGTTGTCTAGGAATTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGGAGGAAGAACATTGATGTTAGTGTGGAGAGCACTAGCCAAGTATACTTTCCAGAATGGATTTATAATCATTTGGATCATGGGGAAGAGTTGCTTATTCGGATTGAAGAAGAAATAGATGCTAAGATTGCAAAGAAATTAGCAATTGTGGGACTTTCATGCATTCAATGGTATCCAGTGGATCGTCCTTCCATGAAAATTGTGGTTCAAATGTTGGAAGGAGAAGGAGACAAATTAACCATGCCTCCTAATCCTTTTGCTTCAACAGTTCCAACAAAGACAAATTTGAGCAAGCCACGAAGAGCTTTTCAACAAGAGTTGGCAATCATTTTAGAACTAGAGCAAAAATAG 1839 0.3921 MDRYLCLFLFLFLTLFVKMRGGRDECMTSNPCGDQGPLIQFPFRLKDQPRHCGYPGFELSCTENNQTMLELPVSVKLLVKKITYKSREIIVQDPDHCLARQLRNLNLAASPFHFKFELDFTFFTCSSYKTAAPLLRAYTFFEHIPCLSVPGNLVYAVYSSIPLRLLDLSSCRRLYNASAPGNRDYEDYMFNGSAFSLKWSKSICGSCPGGGKICRLKKSNGAQPETECIKGVLKKIIVTGAIFGFFLLMLVIVALYRVYRSNKLEREYRINVKKFLQDYEALKPSRYSYSDIKRITNQFKDKLGQGGYGIVYKGKLSHEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNVVRLVGFCADGFKRALIYEYLPNESLEKFIFSRAVKNYSLSWKKLQEIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTIARGTIGYIAPKVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVSVESTSQVYFPEWIYNHLDHGEELLIRIEEEIDAKIAKKLAIVGLSCIQWYPVDRPSMKIVVQMLEGEGDKLTMPPNPFASTVPTKTNLSKPRRAFQQELAIILELEQK* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1191 612 SUPERFAMILY Protein kinase-like (PK-like) 281 569 IPR011009 -
Vvi16g1191 612 FunFam serine/threonine-protein kinase PBS1-like 266 371 - -
Vvi16g1191 612 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Vvi16g1191 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vvi16g1191 612 SMART serkin_6 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1191 612 Gene3D Phosphorylase Kinase; domain 1 268 371 - -
Vvi16g1191 612 ProSiteProfiles Protein kinase domain profile. 297 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1191 612 Pfam Protein kinase domain 299 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1191 612 PANTHER RUST RESISTANCE KINASE LR10-RELATED 269 586 IPR045874 GO:0004672
Vvi16g1191 612 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vvi16g1191 612 FunFam PR5-like receptor kinase 372 579 - -
Vvi16g1191 612 Gene3D Transferase(Phosphotransferase) domain 1 372 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1191 Vvi-Chr16 20587174 20590722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1191 4 590 Receptor kinase-like Gene Family AT1G66910 36.850 1.58e-116 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1191 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1191 - - vvi:100253822 1212.98