Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1190 ATGATGTTCAGAGAAGCTAAACTTGTGGCATTGGCAGTCTTCCACACTTTGTTGCTTGCAATTTGTGTTGCTAATGGAAACCAGACATGCCGGCCCTCTTCTTGTGGGGATATTCAAAACATCAGCTACCCTTTCCGATTGAAAGGTGATCCGTTCTGGTGTGGTGATCCTGAGTATGAATTGGTTTGCGAAAACAATCATACCATGGTAAACCTGGAGTATGGGAAATACTATGTTGCTGATATCAACTACGATCACTCTACCATTCGGGTAGTGGATCCTGGGGTCGAAAAGGGCAACTGTTTCTCCACTCCTCTCCGTTCCTTGACAGTAGACCAATTCGACAGTTTTTTTGACAGTGCATATTATTTGAATCCGTATGAAGCGACTAATACAACGGTTTTGATGAACTGCGAGCAGCCAATAAGTGATGGCAACTATATTCCTATCACTCCTTGCAACAGAAGCAATGAGACTTCATCTTCCTCACAAGCATATGTTTATGCACTAGTCGGCGGAGGAGACTCCCTGCTGGTGAATGATATTATGTATTCATGCACCATCCTCCCGACTATTGTTACTCGATTCATGAAGCCCGGCAATCTTTCAATGTCAGATTTGCAAGAAATGCTACTTCTGGGGGTTGATCTTTCATTCTTGCGCTTCCGTTGCAAAAGCAAATGCGGTAAGAAATGGCCATCCTGCTCTCCAGATTTCGCCAAGAATGCTGTAAAATGCGGTCAAGGCGGTTTTGGCTCTGTGTACAAAGGAAGACTCCGAAGTGGTCACATTGTAGCTGTAAAAATGTTAGTTATGTCAAAAGCTAATGGGCAAGATTTCGTCAATGAAGTTGCTACAATCGGAAGAATTCATCATGTTAATGTGGTGAGACTTATTGGATTTTGTATACAAGGATCAAAATGGGCTCTTGTATATGACTTCATGCCAAATGGGTCTCTTGATAAGTTTGTTTTTCTTGATCGAGGAAACAACATTCCTTTGAGTTGGGAAAGATTATACAAGATTGCACTTGGAGTAGGACGTGGGATTGAATACTTACATCAAGGCTGTGACATGCAAATTCTACATTTTGATATTAAGCCACACAACATTCTTCTTGATGAAGATTTTACCCCAAAAGTTTCAGATTTTGGCCTTGCAAAATTACATTCAACAGATGAAAGTATTGTGTCTCTCACTGCTGCTAGAGGAACATTGGGATATATAGCTCCAGAGCTGTTCTATAAAAATATCGGAGGAGTTTCATATAAAGCTGATGTTTATAGTTTTGGAATGCTGTTGTTAGAAATGGCGGGGAAAAGGAAAAATGTGAATGCATTTGCAGAGCACTCGAGTCAAATATACTTTCCATCATGGATTTATGATCAATATGATCGAGGAGAGGACATGGAAATGGGAGATGCCACCGAGGATGAAAAGAAATTTGTAAGAAAAATGGTGATAGTTGCATTATGGTGTATACAAATGAAGCCTATTGATCGTCCTTCGATGAGCAAAGCATTGGAAATGTTGGAAGGGGATGTTGAACTTTTGCAAATGCCTCCTAAGCCTACTCTATACTCTATGGAAATGCCAGTTGAGGATCACAGGAGCGATCCATTTAGGTTGCCAATTTCCACGTGTCATTCCATGGGTACAATTACCTTGGATGGAAGGTAA 1680 0.4095 MMFREAKLVALAVFHTLLLAICVANGNQTCRPSSCGDIQNISYPFRLKGDPFWCGDPEYELVCENNHTMVNLEYGKYYVADINYDHSTIRVVDPGVEKGNCFSTPLRSLTVDQFDSFFDSAYYLNPYEATNTTVLMNCEQPISDGNYIPITPCNRSNETSSSSQAYVYALVGGGDSLLVNDIMYSCTILPTIVTRFMKPGNLSMSDLQEMLLLGVDLSFLRFRCKSKCGKKWPSCSPDFAKNAVKCGQGGFGSVYKGRLRSGHIVAVKMLVMSKANGQDFVNEVATIGRIHHVNVVRLIGFCIQGSKWALVYDFMPNGSLDKFVFLDRGNNIPLSWERLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLHSTDESIVSLTAARGTLGYIAPELFYKNIGGVSYKADVYSFGMLLLEMAGKRKNVNAFAEHSSQIYFPSWIYDQYDRGEDMEMGDATEDEKKFVRKMVIVALWCIQMKPIDRPSMSKALEMLEGDVELLQMPPKPTLYSMEMPVEDHRSDPFRLPISTCHSMGTITLDGR* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1190 559 SMART serkin_6 240 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1190 559 PANTHER RUST RESISTANCE KINASE LR10-RELATED 244 530 IPR045874 GO:0004672
Vvi16g1190 559 ProSiteProfiles Protein kinase domain profile. 240 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1190 559 SUPERFAMILY Protein kinase-like (PK-like) 246 512 IPR011009 -
Vvi16g1190 559 Gene3D Phosphorylase Kinase; domain 1 246 315 - -
Vvi16g1190 559 FunFam PR5-like receptor kinase 315 523 - -
Vvi16g1190 559 CDD STKc_IRAK 247 513 - -
Vvi16g1190 559 Gene3D Transferase(Phosphotransferase) domain 1 316 529 - -
Vvi16g1190 559 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vvi16g1190 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672|GO:0006468
Vvi16g1190 559 Pfam Protein kinase domain 244 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1190 Vvi-Chr16 20583081 20586632 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1190 247 539 Receptor kinase-like Gene Family AT5G38280 53.020 1.26e-107 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1190 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1190 - - vvi:100854553 642.499