Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1188 ATGGATCCATATCTCTGTTTGTTTTTGTTCTTGTTTCTGACCTTGTTTGTGGAGATGAGAGGGGGCCGAGATGAGTGCATGAAATCAAATCGTTGTGGCGACCAGGGTCCACTCATCCAGTTCCCTTTCCGTCTACAAGGCCAGCCACCCCACTGTGGATACCCGGGATTTAATTTATCTTGCACTGAGAATAATCAGACCATGCTAGAGCTGCCAGGTTCGGTAAAGCTCTTGGTGAAGGATATAACTTACAAATCCCGGGAAATCATTGTCCAGGACCCGGATAATTGCCTTGCGAGACAGCTTGGAAACCTCAATTTATCTGCCTCCCCCTTCCAGTTCAATTTTGGGGAGGAGAATACCTTCTTCGATTGTTCCTCAGATAAAACAGATGCATATTTTTATCAGCCCATCCCTTGCCTTTCTATCCCTGGTAACCCAGTTTATGCTGTTCATTCCTCCGAACTTGTCCAATATTTGAACCTATCCTCTTGCCGCAGGCTTTACAGCGCTTCAGCTCCAGGTAATCAAGCTTATCGGGATTATATATTCAATGGAAGTGCGTTTTCTTTAAAGTGGTCAAATTCAAAAATATGCAGATTGAAGAAGAGTGATAGCACAGAAACTGAATGTATTAAAGGTGTATCGAAGAAAATAATTGTGACAGGTGCAATCTTTGGTTTCTTTCTTCTCATGTTAGTAATTGTTGTGCCTTATCGTGTCTATAGCTCAAATAAAGTAGAAAGAGATAATAAAGTAAAGGTTAAAAAGTTTCTAGAAGACTATGAAGCTCTCAAGCCCTCAAGATACTCCTATGCTGATATTAAAAGGATTACAAGTCAATTCAAAGATAAATTAGGGGAAGGAGGATATGGAACCGTGTACAAAGGAAAGCTTTCAGATGAAGTTTTTGTTGCAGTAAAAATCCTTAACAATTCTCAAGGAAATGGGGAAGAGTTCATTAATGAAGTAGCAACAATGGGTACAATCCACCATGTTAATATAGTTCGTTTAGTTGGATTTTGTGCTGATAGATTTAATCGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTGGAGAAGTTCATATTTTCAAAAGTTGTCAAGAACTATTCACTTAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCAAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAAAGAATCCTTCATTTTGATATCAAACCTCATAATATTTTACTTGACCACAACTTTAATCCAAAGATTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCAGTCTCTATGACAATTGTAAGGGGAACAATGGGCTATATCGCTCCAGAAGTGTTATCTAGGAATTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGAAGGAAGAACATTGATGTTAGTGTGGAGAGTACTAGCCAAGTATATTTCCCAGAATGGATTTATAATCATTTGGATATAGGGGAAGAATTGCATATTCGAATTGAAGAAGAAGGAGATGTTGAGATTGCAAAGAAATTAGCAATTGTGGGACTTTCATGTATTCAGTGGTGTCCAGTGGATCGTCCTTCCATGAAAATTGTGGTTCAAATGTTGGAAGGAGAAGGAGACAAGTTAACCATGCCTCCTAACCCTTTTGCTTCAACAGTTCCAACAAACTTGAGCAAGCCAAGTAGAGTTTTTCAACAAGAGTTGACAATAATTTCAGAACTAGAGTAA 1776 0.3823 MDPYLCLFLFLFLTLFVEMRGGRDECMKSNRCGDQGPLIQFPFRLQGQPPHCGYPGFNLSCTENNQTMLELPGSVKLLVKDITYKSREIIVQDPDNCLARQLGNLNLSASPFQFNFGEENTFFDCSSDKTDAYFYQPIPCLSIPGNPVYAVHSSELVQYLNLSSCRRLYSASAPGNQAYRDYIFNGSAFSLKWSNSKICRLKKSDSTETECIKGVSKKIIVTGAIFGFFLLMLVIVVPYRVYSSNKVERDNKVKVKKFLEDYEALKPSRYSYADIKRITSQFKDKLGEGGYGTVYKGKLSDEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNIVRLVGFCADRFNRALIYEYLPNESLEKFIFSKVVKNYSLSWKKLQEIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTIVRGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVSVESTSQVYFPEWIYNHLDIGEELHIRIEEEGDVEIAKKLAIVGLSCIQWCPVDRPSMKIVVQMLEGEGDKLTMPPNPFASTVPTNLSKPSRVFQQELTIISELE* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1188 591 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
Vvi16g1188 591 ProSiteProfiles Protein kinase domain profile. 280 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1188 591 Pfam Protein kinase domain 282 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1188 591 Gene3D Transferase(Phosphotransferase) domain 1 355 560 - -
Vvi16g1188 591 Pfam Wall-associated receptor kinase galacturonan-binding 26 93 IPR025287 GO:0030247
Vvi16g1188 591 FunFam serine/threonine-protein kinase PBS1-like 247 354 - -
Vvi16g1188 591 SMART serkin_6 280 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1188 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Vvi16g1188 591 CDD STKc_IRAK 286 553 - -
Vvi16g1188 591 PANTHER RUST RESISTANCE KINASE LR10-RELATED 252 569 IPR045874 GO:0004672
Vvi16g1188 591 SUPERFAMILY Protein kinase-like (PK-like) 265 552 IPR011009 -
Vvi16g1188 591 FunFam PR5-like receptor kinase 355 562 - -
Vvi16g1188 591 Gene3D Phosphorylase Kinase; domain 1 246 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1188 Vvi-Chr16 20556743 20559981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1188 4 590 Receptor kinase-like Gene Family AT1G66910 36.141 2.79e-115 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1188 Pkinase 8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1188 - - vvi:100262350 1191.02