Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1187 ATGTTTAGAGAAGCACAACTTGTGGCGTTAGCGCTCTTCCACACTTTCTTGCTTGCAATTTGTGCTGCTAATGGAAACCAGACTTGCAGACCCTCTTCTTGTGGAGAGATTCAAAACATCAGCAACCCTTTCCGATTGAAAGGTGATCCATTTGGGTGTGGTGATCCTGACTATGAATTGGTCTGCGAAAACAATCGTACTATGGTAAACGTCCGGGAGGGTGAGAAATACTATGTTGCTGATATCAACTACGATCACTATACCATTCGGGTAGTGGATCCTGGGGTCGAAAAGGGCAACTGTCTCTCAACTCCTCTGTATTCCTTGTCATATTACAGCTTTCATTCATATTATTATTGGGTACTGGGAGTGACCAATACAACGGTTTTGATGAACTGCGAGCAGCCAATAAGTGATGGCAACTATATTCCTATCACTCCTTGCAACAGAAGCAATGTGACATCATCTTCCTCACAAACATATGTTTATGCACTAGTCGGAGGAGAACTCCTGCGGGTGCATGATATTAAGTATTCATGCACCATCCTCAGGACTATTGCTACTCGATTCTTGAAGCACGACAATCTTTCAATGTCAGATTTGCAAGAAGTGCTGCTTCTGGGGCTTGATCTTTCATTTTTGCGCTTCCGCTGCAAAAGCGAATGCGAGGTGAAAGGGCTAAACTGCGAGCGGAATTATAGCAATTATACCGTACAGTGCACCAAACTTGCTACAATTGGAAGAATTCATCATGTTAATGTGGTGAGACTTGTTGGATTTTGCATACAGAGGTCAAAATGGGCCCTTATATATGACTACATGCCCAATGGATCTCTTGATAAGTTTGTTTTTCTTGATCAAGGAAACAACATTCCTTTGAGTTGGGAAAGATTATACAAGATTGCACTTGGAGTAGGACGTGGGATCAAATACTTACATCAAGGGTGTGATATGCAAATTCTTCATTTTGATATCAAGCCACACAACATTCTTCTCGATGAAGACTTCACACCAAAAGTTTCAGATTTCGGTCTTGCAAAATTATACTCAACAGATGAAAGTATTGTATCAGTCACTGCTGCTAGAGGAACCTTAGGCTACATTGCTCCTGAATTGTTCTACAAAAACATTGGAGGTGTATCATTTAAGGCTGATGTTTATAGTTTTGGAATGTTGTTATTGAAAATGGTGGGGAAAAGGAAGAATGTGAATGCATTTGCAGAGCATTCAAGTCAAATATATTTCCCATCATGGATTTATGATAGATATGATCAAGGAGAGGACATGGAAATGGGAGATGCCACTGAGGATGAAAAAAAGTATGTAAGGAAAATGGTGATAGTTGCGCTATGGTGTGTACAAATGAAGCCTATGGATCGTCCTTCAATGAGCAAAACATTGGAGATGCTTGAAGGAGAGATTGAACTATTGAAAATGCCTCCTAAGCCAACTCTATGGTCTATCGAGAATCATGAGCAATCCATGGTAGAGATGTTCAAGTAA 1503 0.4059 MFREAQLVALALFHTFLLAICAANGNQTCRPSSCGEIQNISNPFRLKGDPFGCGDPDYELVCENNRTMVNVREGEKYYVADINYDHYTIRVVDPGVEKGNCLSTPLYSLSYYSFHSYYYWVLGVTNTTVLMNCEQPISDGNYIPITPCNRSNVTSSSSQTYVYALVGGELLRVHDIKYSCTILRTIATRFLKHDNLSMSDLQEVLLLGLDLSFLRFRCKSECEVKGLNCERNYSNYTVQCTKLATIGRIHHVNVVRLVGFCIQRSKWALIYDYMPNGSLDKFVFLDQGNNIPLSWERLYKIALGVGRGIKYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTDESIVSVTAARGTLGYIAPELFYKNIGGVSFKADVYSFGMLLLKMVGKRKNVNAFAEHSSQIYFPSWIYDRYDQGEDMEMGDATEDEKKYVRKMVIVALWCVQMKPMDRPSMSKTLEMLEGEIELLKMPPKPTLWSIENHEQSMVEMFK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1187 500 SUPERFAMILY Protein kinase-like (PK-like) 242 471 IPR011009 -
Vvi16g1187 500 Gene3D Phosphorylase Kinase; domain 1 215 274 - -
Vvi16g1187 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Vvi16g1187 500 Pfam Protein kinase domain 243 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1187 500 PANTHER RUST RESISTANCE KINASE LR10-RELATED 220 490 IPR045874 GO:0004672
Vvi16g1187 500 SMART serkin_6 163 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1187 500 ProSiteProfiles Protein kinase domain profile. 159 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1187 500 FunFam PR5-like receptor kinase 274 482 - -
Vvi16g1187 500 Gene3D Transferase(Phosphotransferase) domain 1 275 488 - -
Vvi16g1187 500 Pfam Wall-associated receptor kinase galacturonan-binding 29 93 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1187 Vvi-Chr16 20552239 20555839 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1187 242 489 Receptor kinase-like Gene Family AT5G38280 50.397 4.21e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1187 Pkinase 3.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1187 - - vvi:100853615 520.776