Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1185 ATGGGCATCTCTTTATTCTTCTTCTTCTTGTTTATGAGATTGTTTGCAGAGATTAATGGAGGGAGCCAAGATGATGACTGCAAGGCGTCAAGGTGCAGTCACCATGGTCCAGTCATCCGCTTTCCGTTCAGGCTAAAACACCAGCCAGAACACTGTGGATATCCGGAGTTTGAGTTATCATGCTCAGAAGAGAAGCGGACCATACTAGAGCTGCCCTCTTCAGGAAAGCTCTGGGTGAAGGAAATAAATTACAATTCTCAGACGATTATTGTTCTCTGGTACCTGCGTTATTGCCTTCCAAGGAAGATTCTAAACTTTAATTTATCTGCCTTTCCCTTCCAGTTCACAGACGAGTACGGATGGGGGTACGCATTAGACATCTCCTTCTTCAATTGTTCAGAAAGTAAAGCAGAGTCATACGAGCTTAGGTCCATCCCTTGCAGTTTTCTCTCAAGTAACCCAGTTTATGTCGCTCCTTCCTCTTACTCTCTCGCTAAAGGGAACTTATCCTCTTGCCGGAAGATTTTCAAAGCTACACTCCCATATTATTATATATATGGAGGGGAATACGGTACTTTTATGAATTGGTCAAAACCTATGTGCGGAAACTGTGAAGCAAAAGGAAACAAGTGCCAACGGAAGAAGAATAATAGCACGGAACCTGAAATCGAATGCATTGATAAACCAGCAAAAGGTACCAAATCCCGCTTCTTCATTATTTTCACCTTGCAGGCCCTTTCTTATCTCCTACTATGA 756 0.4286 MGISLFFFFLFMRLFAEINGGSQDDDCKASRCSHHGPVIRFPFRLKHQPEHCGYPEFELSCSEEKRTILELPSSGKLWVKEINYNSQTIIVLWYLRYCLPRKILNFNLSAFPFQFTDEYGWGYALDISFFNCSESKAESYELRSIPCSFLSSNPVYVAPSSYSLAKGNLSSCRKIFKATLPYYYIYGGEYGTFMNWSKPMCGNCEAKGNKCQRKKNNSTEPEIECIDKPAKGTKSRFFIIFTLQALSYLLL* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1185 251 Pfam Wall-associated receptor kinase galacturonan-binding 27 91 IPR025287 GO:0030247
Vvi16g1185 251 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 243 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1185 Vvi-Chr16 20512894 20513649 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1185 21 220 C3H Transcription Factor Family AT2G46495 31.754 1.01e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1185 - - vvi:100243477 491.886