Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1184 ATGCTCGGGATGTTGTGTCTATTCGCCTATTTGATTTACAAGTTCCACCGGAGACATCTATCATTGGATGATAGCATTGAAGAATTCTTACGGAGTCAAAAAAATCTCCAACCCATCAAGTACTCGTATTCAGACATAAAGAAGATGACTCATAACTTTGCGAATAAATTAGGTCAAGGAGGTTTTGGCTCTGTATATAAAGGAAAACTTCGAAGTGGTCACATTGTAGTTGTGAAAGTGCTGGTCATGTCAAAAGCTAATGGACAAGATTTCATCAATGAGGTTGCAACAATAGGAAGAATTCACCATGTTAATGTGGTGAGACTTGTAGGATTTTGTGTACAGGGATCAAAATGGGCACTTATATATGACTTCATGCCCAATGGTTCTCTTGATAAGTTTATTTTTCTTAAAGAAGAAAATAACACTTTTTTAAGCTGGGAAAGGTTGTATAAGGTTGCACTTGGAGTGGGGCGTGGGATTGAATACTTACATCAAGGTTGTGACATGCAAATTCTACATTTTGATATCAAGCCACACAATATTCTTCTTGATGAAGACTTTACACCAAAAGTTTCAGATTTTGCCCTTGCAAAATTGTATTCAACGGATGAAAGTATGGTGTCTCTCACTGCTGCATGA 642 0.3723 MLGMLCLFAYLIYKFHRRHLSLDDSIEEFLRSQKNLQPIKYSYSDIKKMTHNFANKLGQGGFGSVYKGKLRSGHIVVVKVLVMSKANGQDFINEVATIGRIHHVNVVRLVGFCVQGSKWALIYDFMPNGSLDKFIFLKEENNTFLSWERLYKVALGVGRGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFALAKLYSTDESMVSLTAA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1184 213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Vvi16g1184 213 FunFam Os07g0541700 protein 126 213 - -
Vvi16g1184 213 SUPERFAMILY Protein kinase-like (PK-like) 29 207 IPR011009 -
Vvi16g1184 213 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Vvi16g1184 213 Gene3D Phosphorylase Kinase; domain 1 16 125 - -
Vvi16g1184 213 Pfam Protein kinase domain 54 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1184 213 ProSiteProfiles Protein kinase domain profile. 51 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1184 213 Gene3D Transferase(Phosphotransferase) domain 1 126 213 - -
Vvi16g1184 213 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 212 IPR045874 GO:0004672
Vvi16g1184 213 FunFam serine/threonine-protein kinase PBS1-like 21 125 - -
Vvi16g1184 213 SMART serkin_6 51 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1184 Vvi-Chr16 20509688 20510329 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1184 40 210 Receptor kinase-like Gene Family AT5G38280 57.558 2.44e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1184 Pkinase 6.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1184 - - vvi:100854673 427.557