Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g1182 | ATGACCGAAGGCTTCACAGAAAAGTTAGGTGAGGGCGGCTATGGTTCAGTATATAAAGGAAAGCTGAAAAGTGGCCATCTTGTAGCAGTAAAAATGCTGGCCAATTCCAAAGCTAATGGACAAGATTTCATCAATGAAGTTGCTACAATTGGAAGGATTCATCATTTCAATGTGGTGCAACTAATTGGATTTTGTGTTGAGGGATCAAAACGAGCTCTTGTGTATGACTTCATGCCTAATGGATCTCTTGACAAGTACATATTTCCTGAAAAGGAGGAATATATCTCCTTGAGCTTTGAGAAAATGTATCAGATTTCTCTAGGAGTGGCCCACGGGATTGAATACTTACATCGGGGTTGTGATATGCAAATCCTACATTTTGATATCAAGCCCCATAATATACTTCTTGATAAGAATCTCACTCCAAAGGTTTCAGACTTTGGCCTAGCAAAATCTTATCCAGCATATCATAGCATCGTGTCTTTAACTGGAGCAAGAGGGACAAGGGGATACATGGCTCCAGAACTGTTCTACAAAAACATTGGAGGAGTCTCATACAAAGCTGATGTCTATAGTTTTGGAATGTTGTTGATGGAAATGGCAGGCAGAAGGAGGAATTTGAATGTGTTTGCTGAGCATTCAAGCCAAATTTACTTCCCTTCCTGGGCCTACGATCAATTCAATGAAGGAAAGGGCATAGAAATAGGAGATGCCACAGAGGAAGAACAAAAACTTGCAAAAAAGATGGTCCTAGTAGCCTTATGGTGCATACAGTTTAAGCCCAGTGAACGTCCTTCAATGCACAAAGTTATAGAGATGCTTGAAGGAAAGGTTGACCAACTGCAAATGCCTCCAAAGCCTTTTCTAACTCCACAAGAGGTGTAA | 885 | 0.4068 | MTEGFTEKLGEGGYGSVYKGKLKSGHLVAVKMLANSKANGQDFINEVATIGRIHHFNVVQLIGFCVEGSKRALVYDFMPNGSLDKYIFPEKEEYISLSFEKMYQISLGVAHGIEYLHRGCDMQILHFDIKPHNILLDKNLTPKVSDFGLAKSYPAYHSIVSLTGARGTRGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGRRRNLNVFAEHSSQIYFPSWAYDQFNEGKGIEIGDATEEEQKLAKKMVLVALWCIQFKPSERPSMHKVIEMLEGKVDQLQMPPKPFLTPQEV* | 295 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g1182 | 294 | FunFam | serine/threonine-protein kinase PBS1-like | 1 | 77 | - | - | |
Vvi16g1182 | 294 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 124 | 136 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi16g1182 | 294 | SMART | serkin_6 | 3 | 274 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g1182 | 294 | SUPERFAMILY | Protein kinase-like (PK-like) | 6 | 275 | IPR011009 | - | |
Vvi16g1182 | 294 | Pfam | Protein kinase domain | 6 | 272 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g1182 | 294 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 77 | - | - | |
Vvi16g1182 | 294 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 1 | 288 | IPR045874 | GO:0004672 | |
Vvi16g1182 | 294 | Gene3D | Transferase(Phosphotransferase) domain 1 | 78 | 284 | - | - | |
Vvi16g1182 | 294 | ProSiteProfiles | Protein kinase domain profile. | 3 | 289 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g1182 | 294 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 31 | IPR017441 | GO:0005524 | |
Vvi16g1182 | 294 | PIRSF | ILK | 4 | 284 | - | - | |
Vvi16g1182 | 294 | FunFam | PR5-like receptor kinase | 78 | 286 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi16g1182 | Vvi-Chr16 | 20492641 | 20493525 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi16g1182 | 1 | 294 | Receptor kinase-like Gene Family | AT5G38280 | 53.000 | 1.94e-108 | 327 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRK10L-2 | Vvi16g1182 | Pkinase | 1.2e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g1182 | - | - | vvi:100243578 | 545.043 |