Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1182 ATGACCGAAGGCTTCACAGAAAAGTTAGGTGAGGGCGGCTATGGTTCAGTATATAAAGGAAAGCTGAAAAGTGGCCATCTTGTAGCAGTAAAAATGCTGGCCAATTCCAAAGCTAATGGACAAGATTTCATCAATGAAGTTGCTACAATTGGAAGGATTCATCATTTCAATGTGGTGCAACTAATTGGATTTTGTGTTGAGGGATCAAAACGAGCTCTTGTGTATGACTTCATGCCTAATGGATCTCTTGACAAGTACATATTTCCTGAAAAGGAGGAATATATCTCCTTGAGCTTTGAGAAAATGTATCAGATTTCTCTAGGAGTGGCCCACGGGATTGAATACTTACATCGGGGTTGTGATATGCAAATCCTACATTTTGATATCAAGCCCCATAATATACTTCTTGATAAGAATCTCACTCCAAAGGTTTCAGACTTTGGCCTAGCAAAATCTTATCCAGCATATCATAGCATCGTGTCTTTAACTGGAGCAAGAGGGACAAGGGGATACATGGCTCCAGAACTGTTCTACAAAAACATTGGAGGAGTCTCATACAAAGCTGATGTCTATAGTTTTGGAATGTTGTTGATGGAAATGGCAGGCAGAAGGAGGAATTTGAATGTGTTTGCTGAGCATTCAAGCCAAATTTACTTCCCTTCCTGGGCCTACGATCAATTCAATGAAGGAAAGGGCATAGAAATAGGAGATGCCACAGAGGAAGAACAAAAACTTGCAAAAAAGATGGTCCTAGTAGCCTTATGGTGCATACAGTTTAAGCCCAGTGAACGTCCTTCAATGCACAAAGTTATAGAGATGCTTGAAGGAAAGGTTGACCAACTGCAAATGCCTCCAAAGCCTTTTCTAACTCCACAAGAGGTGTAA 885 0.4068 MTEGFTEKLGEGGYGSVYKGKLKSGHLVAVKMLANSKANGQDFINEVATIGRIHHFNVVQLIGFCVEGSKRALVYDFMPNGSLDKYIFPEKEEYISLSFEKMYQISLGVAHGIEYLHRGCDMQILHFDIKPHNILLDKNLTPKVSDFGLAKSYPAYHSIVSLTGARGTRGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGRRRNLNVFAEHSSQIYFPSWAYDQFNEGKGIEIGDATEEEQKLAKKMVLVALWCIQFKPSERPSMHKVIEMLEGKVDQLQMPPKPFLTPQEV* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1182 294 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Vvi16g1182 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi16g1182 294 SMART serkin_6 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1182 294 SUPERFAMILY Protein kinase-like (PK-like) 6 275 IPR011009 -
Vvi16g1182 294 Pfam Protein kinase domain 6 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1182 294 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Vvi16g1182 294 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 288 IPR045874 GO:0004672
Vvi16g1182 294 Gene3D Transferase(Phosphotransferase) domain 1 78 284 - -
Vvi16g1182 294 ProSiteProfiles Protein kinase domain profile. 3 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1182 294 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vvi16g1182 294 PIRSF ILK 4 284 - -
Vvi16g1182 294 FunFam PR5-like receptor kinase 78 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1182 Vvi-Chr16 20492641 20493525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1182 1 294 Receptor kinase-like Gene Family AT5G38280 53.000 1.94e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1182 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1182 - - vvi:100243578 545.043