Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1181 ATGGATCGATATCTCTGTTTGTTTTTGTTCTTGTTTCTGACCTTGTTTGTGCAGATGAGAGGGGGCCGAGATGAGTGCATGACATCGAATGGTTGTGGCGACCAGGGTCCACTCATCCGGTTCCCTTTCCGTCTAAAACACCAGCCACACCACTGTGGATATCCGGGATTTGAGTTATCTTGCACTGAGAATAATCAGACCATGCTAGACCTGCCAGTTTCGGTAAAGCTCTTGGTGAAGAAAATAGTTTACAAATCCCGGGAAATCATTATCCAGGACCCGGATAATTGCATTGCGAGACAGCTTCGAAACCTCAATTTAGCTGCCTCCCCCTTCCACTTCAAATTTGAACGGGACTTCATCTTGTTCAATTGTTCCGCAGATAAAACAGAATCATCTCGTTTTCAGTCCATCCCTTGCCTTTCTATCCCTGGTAACCCAGTTTATGCTGTTTATTCCTCCAGTTATGTCCAATATACGGATCTATCCTCTTGCCACAGGCTTTACAACGCTTCAGCTCCAGTATGTGGAAGCTGCCCAGAAGGAGGAAAAATATGCAGACTGAAGAAGAGTAATAGCACGGAACCAGAAACTGAATGTATTAAAGGTGTATCGAAGAAAATAATTGTGACAGGTGCAATCTTTGGTTTCTTTCTTCTCATGTTAGTAATTGTTGTGCCTTATCGAGTCTATAGCTCAAATAAAGTAGAAAGAGAGAATAGAGTAAAGGTTAAAAAGTTTCTAGAAGACTATGAAGCTCTCAAGCCCTCAAGATACTCCTATGCTGATATTAAAAGGATTACGAGTCAATTCAAAAATAAATTAGGGGAAGGAGGATATGGAACAGTGTACAAAGGAAAGCTTTCAGATGAAGTCTTTGTTGCAGTAAAAATCCTTGACAATTCTCAAGGAAATGGGGAAGAGTTCATTAATGAAGTAGCAACAATGGGTACAATCCACCATGTTAATATAGTTCGTTTAGTTGGATTTTGTGCTGATAGATTTAAACGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTGGAGAAGTTCATATTTTCAAAAGTTGTCAAGAACTATTCACTTAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAACAAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAAAGAATCCTTCATTTTGATATCAAACCTCATAATATTTTACTTGACCACAACTTTAATCCAAAGATTTCTGACTTTGGTTTAGCCAAATTGTGCTCTAAGGAACAAAGTGCAGTCTTTATGACAATTGTAAGGGGAACAATGGGTTATATCGCTCCAAAAGTGTTATCTAGGAATTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGAAGGAAGAACATTGATGTTAGTGTGGAGAGTACTAGCCAAGTATATTTCCCAGAATGGATTTATAATCATTTGGATATAGGGGAAGAATTGCATATTCGAATTGAAGAAGAAGGAGATGTTGAGATTGCAAAGAAATTAGCAATTGTGGGACTTTCATGTATTCAGTGGTGTCCAATGGATCGTCCTTCCATGAAAATTGTGGTTCAAATGTTGGAAGGAGAAGGAGACAAGTTAACCATGCCTCCTAACCCTTTTGCTTCAACAGTTCCAACAAACTTGAGCAAGCCAGGTAGAGTTTTTCAACAAGAGTTGGCAATAATTTCAGAACTAGAGTAA 1743 0.3844 MDRYLCLFLFLFLTLFVQMRGGRDECMTSNGCGDQGPLIRFPFRLKHQPHHCGYPGFELSCTENNQTMLDLPVSVKLLVKKIVYKSREIIIQDPDNCIARQLRNLNLAASPFHFKFERDFILFNCSADKTESSRFQSIPCLSIPGNPVYAVYSSSYVQYTDLSSCHRLYNASAPVCGSCPEGGKICRLKKSNSTEPETECIKGVSKKIIVTGAIFGFFLLMLVIVVPYRVYSSNKVERENRVKVKKFLEDYEALKPSRYSYADIKRITSQFKNKLGEGGYGTVYKGKLSDEVFVAVKILDNSQGNGEEFINEVATMGTIHHVNIVRLVGFCADRFKRALIYEYLPNESLEKFIFSKVVKNYSLSWKKLQEIAIGITKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVFMTIVRGTMGYIAPKVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVSVESTSQVYFPEWIYNHLDIGEELHIRIEEEGDVEIAKKLAIVGLSCIQWCPMDRPSMKIVVQMLEGEGDKLTMPPNPFASTVPTNLSKPGRVFQQELAIISELE* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1181 580 SUPERFAMILY Protein kinase-like (PK-like) 254 541 IPR011009 -
Vvi16g1181 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Vvi16g1181 580 FunFam PR5-like receptor kinase 344 551 - -
Vvi16g1181 580 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vvi16g1181 580 SMART serkin_6 269 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1181 580 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
Vvi16g1181 580 ProSiteProfiles Protein kinase domain profile. 269 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1181 580 Gene3D Phosphorylase Kinase; domain 1 237 343 - -
Vvi16g1181 580 Gene3D Transferase(Phosphotransferase) domain 1 344 549 - -
Vvi16g1181 580 FunFam serine/threonine-protein kinase PBS1-like 236 343 - -
Vvi16g1181 580 Pfam Protein kinase domain 271 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1181 580 PANTHER RUST RESISTANCE KINASE LR10-RELATED 241 557 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1181 Vvi-Chr16 20479986 20483075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1181 4 579 Receptor kinase-like Gene Family AT1G66910 35.347 3.30e-112 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1181 Pkinase 8.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1181 - - vvi:100854786 1139.02