Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1180 ATGATAAACAGCCGGAATGGTGACAAATACGATGTTGCTGATATCAACTACGATCACTCTACCATTCGGGTAGTGGATCCTGGGGTGAAAAAGGGCAACTGTTTCTCAACTCCTCTCTATTCCTTGCCATATTACATCTTTGATTCATATTATTATTCGGTACTGGGAGTGAGCAATACAACGGTTTTGATGAACTGCGAGCAGCCAATAAGTGATGACAACTATATTCCTATCACTCCTTGCAACAGTAGCAATGTGACTTCATCTTCCTCACAAGCACATCTTTATGCACTAGTCGGAGGAAAATACATGGAAGTGGGAGATATTAAGTATTCATGCACCATCCTCAGGACTATTGCTACTCGATTCTTGAAGCACGACAATCTTTCAATGTCAGATTTGCAAGAAGTGCTGCTTCTGGGGCTTGATCTTTCATTTTTGAGCTTCCGCTGCAAAAGCGAATGCGAGGTGAAAGGGCTAAACTGCGACGTGAATTATAGCAATCATACCGTACAGTGCACCAAACCTGGGGCAGTCTTGATATTTCAACTCATGGTCATGATCATCATCGGACGAGCTGTGATTGGTATTTTGTGCCTCTTTGCCTATTTAATTTACAAGTTTCGACGGAGACACTTATCATTAGATGATGATATTGAAGAATTCTTACATAACTACCAAAATCTTCGACCAATCAAATACACATATTCAGACATAAAGAAGATGACTTATAATTTTAAGCATAAATTGGGTCAAGGAGGTTTTGGCTCTGTGTACAAAGGAAAACTCCGAAGTGGCCGCATTGTAGCTGTAAAAATGTTGGTTATGTCAAAGGCTAATGGGCAGGATTTTATCAATGAAGTTGCTACAATTGGAAGAATTCATCATGTTAATGTGGTGAGACTTGTTGGATTTTGCATACAGAGATCAAAATGGGCCCTTATATATGACTACATGCCCAATGGATCTCTTGATAAGTTTGTTTTTCTTGATCAAGGAAACAACATTCCTTTGAGTTGGGAAAGATTATACAAGATTGCACTTGGAGTAGGACGTGGGATCGAATACTTACATCAAGGGTGTGATATGCAAATTCTTCATTTTGATATCAAGCCACACAACATTCTTCTTGATGAAGACTTCACACCAAAAGTTTCAGATTTTGGTCTTGCAAAATTATACTCAACAGATGAAAGTATTGTATCAGTCACTGCTGCTAGAGGAACCTTGGGCTACATTGCTCCTGAATTGTTCTACAAAAACATTGGAGGTGTATCATTTAAGGCTGATGTTTATAGTTTTGGAATGTTGTTATTGGCAATGGTGGGAAAAAGGAAGAATGTGAATGCATTTGCAAGGCATTCAAGTCAAATATATTTCCCATCATGGATTTATGATAGATATGATCAAGGAGAGGACATGGAAATGGGAGATGCCACTGAGGATGAAAAAAAGTATGTAAGGAAAATGGTGATAGTTGCGCTATGGTGTGTACAAATGAAGCCTATGGATCGTCCTTCAATGAGCAAAACATTGGAGATGCTTGAAGGAGATATTGAACTATTGAAAATGCCTCCTAAGCCAACTCTATGGTCTATCGAGAATCATGAGCAATCCATGGTAGAGGTACCAATTTCATCATCCAATTCCATGGGTACAATCAGCTTAAATGGAAGGTAG 1680 0.3899 MINSRNGDKYDVADINYDHSTIRVVDPGVKKGNCFSTPLYSLPYYIFDSYYYSVLGVSNTTVLMNCEQPISDDNYIPITPCNSSNVTSSSSQAHLYALVGGKYMEVGDIKYSCTILRTIATRFLKHDNLSMSDLQEVLLLGLDLSFLSFRCKSECEVKGLNCDVNYSNHTVQCTKPGAVLIFQLMVMIIIGRAVIGILCLFAYLIYKFRRRHLSLDDDIEEFLHNYQNLRPIKYTYSDIKKMTYNFKHKLGQGGFGSVYKGKLRSGRIVAVKMLVMSKANGQDFINEVATIGRIHHVNVVRLVGFCIQRSKWALIYDYMPNGSLDKFVFLDQGNNIPLSWERLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSDFGLAKLYSTDESIVSVTAARGTLGYIAPELFYKNIGGVSFKADVYSFGMLLLAMVGKRKNVNAFARHSSQIYFPSWIYDRYDQGEDMEMGDATEDEKKYVRKMVIVALWCVQMKPMDRPSMSKTLEMLEGDIELLKMPPKPTLWSIENHEQSMVEVPISSSNSMGTISLNGR* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1180 559 SMART serkin_6 244 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1180 559 ProSiteProfiles Protein kinase domain profile. 244 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1180 559 FunFam serine/threonine-protein kinase PBS1-like 215 318 - -
Vvi16g1180 559 PANTHER RUST RESISTANCE KINASE LR10-RELATED 216 535 IPR045874 GO:0004672
Vvi16g1180 559 Gene3D Transferase(Phosphotransferase) domain 1 319 532 - -
Vvi16g1180 559 SUPERFAMILY Protein kinase-like (PK-like) 226 516 IPR011009 -
Vvi16g1180 559 ProSitePatterns Protein kinases ATP-binding region signature. 250 272 IPR017441 GO:0005524
Vvi16g1180 559 Gene3D Phosphorylase Kinase; domain 1 218 318 - -
Vvi16g1180 559 FunFam PR5-like receptor kinase 319 527 - -
Vvi16g1180 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Vvi16g1180 559 Pfam Protein kinase domain 244 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1180 Vvi-Chr16 20475957 20478938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1180 225 534 Receptor kinase-like Gene Family AT5G38280 52.351 1.35e-114 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1180 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1180 - - vvi:100854816 1094.34