Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1179 ATGATGCTCAGAGAAGCAAAAGTTGTGGCATTAACAGTCTTCCACACTTTCTTGCTTGCAATTTGTGCTGCTAATGGAAACCAGACATGCAGGCCTTCTTCTTGTGGAGATATTAAAAAAATCAGCAACCCTTTCCGATTGAAAGGTGATCCGTCTGGGTGTGGTGATCCTGACTATGAATTGGTCTGCGAAAATAATCGTACTATGGTAAACCTGGAGCATGGGAAATACTATGTTGCCGATATCAACTACGTTAACTACACCATTCGGGTAGTGGATCCTGGGGTGGAAAAGGGCAACTGTTTCTCCGCTCCTCTGTATTCCTTGACAAGAGAAATATTCCGTTCTGATAAGAGAGCATATTTTTTGAATCCGCATGAAGCGACCAATACCACGGTTTTGATGAACTGCGAGCAGCCAATAAGTGATGGCAACTATATTCCTATCACTCCTTGCAACAGAAGCAATGTGACTTCATCTTCCTCACAAGCATATGTTTAT 501 0.4251 MMLREAKVVALTVFHTFLLAICAANGNQTCRPSSCGDIKKISNPFRLKGDPSGCGDPDYELVCENNRTMVNLEHGKYYVADINYVNYTIRVVDPGVEKGNCFSAPLYSLTREIFRSDKRAYFLNPHEATNTTVLMNCEQPISDGNYIPITPCNRSNVTSSSSQAYVY 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1179 167 PANTHER OS01G0690200 PROTEIN 13 157 - -
Vvi16g1179 167 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1179 Vvi-Chr16 20461532 20462032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1179 24 159 C3H Transcription Factor Family AT2G46495 29.286 6.12e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1179 - - vvi:109124196 350.517