Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1178 ATGGACCTATCGTCTTGCCGCAGGCTTTACAACGCTTCAGTTGGATATCATGTCTTTACGGATTATAAATTCAATGGAAGTGCGTTTTCTTTGAAGTGGCCGAAATCAATATGTGGAAGCTGCCTACGAGGAGGACACATATGCAGACTGAAGAAGAGTAATAGCAAGGAACCAGAAACTGAATGTATTAAAGGTGTATCAAAGCAAGCAATAGTAACAGGCACAATCTTTGGTTTCTTTCTACTTGTGTTAGTAATTGCTATGTTTTATCGTCTCTATAGATCAGATAAATTAGAAAGAGAGAATGGAATAAAGGTTAAAAGGTTTCTGGAAGACTATGAAGCTCTCAAGCCCTCAAGATACTCCTATGCTGATATTAAAAGGATTACAAATCAATTCAAAGATAAATTAGGCCAAGGAGGTTATGGAACCGTGTACAAGGGAAAGCTTTCACATGAAGTTTTTGTTGCAGTAAAAATCCTTAATAATTCTCAAGGAAATGGAGAAGAGTTCATTAATGAAGTGGCAACGATGGGTACAATCCACCATGTTAATATAGTTCGCTTAGTCGGATTTTGTGCTGATGGATTTAAACGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTAGAGAAGTTCATATTTTCAAGAGATGTTAAGAACTATTCACTCAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCGAAAGGAATTGAGTATCTTCATCAAGGTTGTGATAAAAGAATCCTCCATTTTGATATCAAACCTCATAATATTTTACTTGATCACAACTTTAATCCAAGGGTTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCGGTCTCTATGACCGTTGCAAGGGGAACAATAGGCTACATTGCTCCAGAAGTGTTGTCTAGGAATTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGGAGGAAGAATATTGATGTTAGTGTGGAGAGTACTAGCCAAGTATACTTCCCAGAATGGATTTATAATCATTTGGATATAGGGGAAGAATTGTATATTCGGATTGAAGAAAAAGGAGATGTTGAGATTGCAAAGAAATTAGCAATTGTGGGACTCTCATGTATTCAATGGTTTCCAATGGATCGTCCTTCCATGAAAATTGTGGTTCAAATGTTGGAAGGAGGAGGCAAGTTAACCATGCCTCCTAATCCTTTTGCTTCAACAACTCCAACAAAGACAAACTTGAGCAAACCAGGAAGTGTTTTTCAACAAGAGTTAGCAATCATTTCAGAAATAGAGTAA 1332 0.3671 MDLSSCRRLYNASVGYHVFTDYKFNGSAFSLKWPKSICGSCLRGGHICRLKKSNSKEPETECIKGVSKQAIVTGTIFGFFLLVLVIAMFYRLYRSDKLERENGIKVKRFLEDYEALKPSRYSYADIKRITNQFKDKLGQGGYGTVYKGKLSHEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNIVRLVGFCADGFKRALIYEYLPNESLEKFIFSRDVKNYSLSWKKLQEIAIGIAKGIEYLHQGCDKRILHFDIKPHNILLDHNFNPRVSDFGLAKLCSKEQSAVSMTVARGTIGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVSVESTSQVYFPEWIYNHLDIGEELYIRIEEKGDVEIAKKLAIVGLSCIQWFPMDRPSMKIVVQMLEGGGKLTMPPNPFASTTPTKTNLSKPGSVFQQELAIISEIE* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1178 443 FunFam serine/threonine-protein kinase PBS1-like 100 205 - -
Vvi16g1178 443 Gene3D Phosphorylase Kinase; domain 1 104 205 - -
Vvi16g1178 443 Pfam Protein kinase domain 133 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1178 443 PANTHER RUST RESISTANCE KINASE LR10-RELATED 105 419 IPR045874 GO:0004672
Vvi16g1178 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Vvi16g1178 443 FunFam PR5-like receptor kinase 206 412 - -
Vvi16g1178 443 SMART serkin_6 131 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1178 443 SUPERFAMILY Protein kinase-like (PK-like) 116 402 IPR011009 -
Vvi16g1178 443 ProSitePatterns Protein kinases ATP-binding region signature. 137 159 IPR017441 GO:0005524
Vvi16g1178 443 Gene3D Transferase(Phosphotransferase) domain 1 206 407 - -
Vvi16g1178 443 ProSiteProfiles Protein kinase domain profile. 131 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1178 443 CDD STKc_IRAK 137 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1178 Vvi-Chr16 20456033 20458911 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1178 35 442 Receptor kinase-like Gene Family AT1G66910 43.750 1.15e-111 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1178 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1178 - - vvi:100243072 894.804