Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1174 ATGAGATTGTTTGCAGAAATTGGAGGGAGGCAAGATGGGTGCAAGGAGTCGAGGTGCAGTGCCCATGGCCCAGTCATCCGATTTCCTTTCCGGCTAAAACACCAGCCAAACCAGTGTGGATATCCTGGGTTCGAGATCTCTTGCTCAGAAGAGAAGCGGACCATGCTAGAGCTGCCCTATTCAGTAAAACTCTCGGTGCAGAAAATAAATTACACTTCCCAGGAAATTTGGGTCTCTGGACGGGATTTTTGCAAAAACTTTAATTTATCTGCCTCTCCATTCCAGTTCATGAGTGCGTACCGATCTGACTACATAATCTTCAGTTGTTCAGAGAGCAAAGCAGATCCATATAAAAATCTTAATCCTACCCATTGCAGTTTTCTCCCCAATAACCTAGTTTACAGTGTGAGTCCCGAGGCTAGTCTCAGTCACTTGGACTTATCCTCGTGCTCCATGATCTACTATTTTTCAATCCCATCTTGGTCTGTAGACCTTGGGGACTATAGTGAATATAATGTTGTCATGAATTGGTCAAGACCATCGTGTGGAGACTGCGAAGCAAAAGGAAAGAGATGCAGATTGCAGGAGAGTAATATCAAGGAACCTGAAATCGAATGTGTGGATCAACCACCAAAAGATGTATCAAAAGAGTGGACGATTACAGGAGTAATTCTTGGTTTCTTTCTTCTCTTGCTAGTAGTCATTATTTGCTATAATGTCTATACCACTGATAAATCAAAAAAAGAGCACAGCAAAAAGCTTCAAAAGTTTTTGGAAGATTATAGAGCTCTCAACCCATCAAGGTACTCCTATGCCGATATTAAGAAGATAACAAATCTGTTCAAGGATAAATTGGGTGAAGGAGGTTATGGAACCATTTATAAAGGAAAACTTTCAAATGAAGTTTTTGTTGCAGTAAAAATCCTTAATGATTCCAAAGAAAATGGTGAAGAGTTTATTAATGAAGTAAGAACAATGGGTAGAATCCATCACATTAATGTGGTTCGCTTAGTTGGATTTTGTGCTGATGGTTATAAACGAGCTTTGATTTATGAATTCTTACCAAATGAGTCTCTCGAGAAGTTTATATTTAAGAACCAATCACTTGGTTGGCAAAAGCTTCATGATATCGCTCTAGGTATAGCTAAAGGAATTGAATATCTTCACCAAGGTTGTGATCAACGAATCCTTCATTTTGATATTAAACCTCATAATATTTTGCTAGATCAAAATTTTAACCCCAAAATCTCTGATTTTGGTTTAGCAAAATTATGTTCTAAGGAACAAAGTGTTGTTTCTATGACAGCAGCAAGGGGGACCATGGGCTATATTGCACCAGAAGTGTTGTCTAGGAATTTTGGAAATGTATCCTATAAATCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTAGGAGGAAGGAAGAATAGTGATGCTATAATGGAGAACACTAGCCAAATGTATTTTCCAGAATGGCTCTATAATCATTTAGAACAGAATGGAGAGATACATATCCGAATTGAGAAAGAGGAAGACACTAAAATAGCAAAAAGGCTAAGCATTGTGGGTCTTTGGTGCATTCAATGGCACCCAATAGATCGCCCTTCCATGAAAATTGTGCTAAAAATGTTGGAAGGAGAAGACAATATAACCCTGCCTCCCAATCCTTTTGCCTCTTCAGGTCCAACTAGAACAAATGTTAGACGACGAAGAACATCTCTCCAACAAGAGTTGATAGTTATTTCGGAGTTAGAGTAA 1764 0.3855 MRLFAEIGGRQDGCKESRCSAHGPVIRFPFRLKHQPNQCGYPGFEISCSEEKRTMLELPYSVKLSVQKINYTSQEIWVSGRDFCKNFNLSASPFQFMSAYRSDYIIFSCSESKADPYKNLNPTHCSFLPNNLVYSVSPEASLSHLDLSSCSMIYYFSIPSWSVDLGDYSEYNVVMNWSRPSCGDCEAKGKRCRLQESNIKEPEIECVDQPPKDVSKEWTITGVILGFFLLLLVVIICYNVYTTDKSKKEHSKKLQKFLEDYRALNPSRYSYADIKKITNLFKDKLGEGGYGTIYKGKLSNEVFVAVKILNDSKENGEEFINEVRTMGRIHHINVVRLVGFCADGYKRALIYEFLPNESLEKFIFKNQSLGWQKLHDIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDQNFNPKISDFGLAKLCSKEQSVVSMTAARGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNSDAIMENTSQMYFPEWLYNHLEQNGEIHIRIEKEEDTKIAKRLSIVGLWCIQWHPIDRPSMKIVLKMLEGEDNITLPPNPFASSGPTRTNVRRRRTSLQQELIVISELE* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1174 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Vvi16g1174 587 PANTHER RUST RESISTANCE KINASE LR10-RELATED 251 563 IPR045874 GO:0004672
Vvi16g1174 587 FunFam PR5-like receptor kinase 354 555 - -
Vvi16g1174 587 Pfam Protein kinase domain 282 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1174 587 Pfam Wall-associated receptor kinase galacturonan-binding 14 79 IPR025287 GO:0030247
Vvi16g1174 587 Gene3D Phosphorylase Kinase; domain 1 239 353 - -
Vvi16g1174 587 FunFam serine/threonine-protein kinase PBS1-like 245 353 - -
Vvi16g1174 587 ProSiteProfiles Protein kinase domain profile. 279 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1174 587 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524
Vvi16g1174 587 CDD STKc_IRAK 285 548 - -
Vvi16g1174 587 SMART serkin_6 279 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1174 587 SUPERFAMILY Protein kinase-like (PK-like) 262 547 IPR011009 -
Vvi16g1174 587 Gene3D Transferase(Phosphotransferase) domain 1 354 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1174 Vvi-Chr16 20366617 20370092 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1174 231 567 Receptor kinase-like Gene Family AT1G66910 48.857 2.50e-111 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1174 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1174 - - vvi:100854842 1180.24