Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1173 ATGATGTTGAGGGAGGCGCAAGTTTTGGAAATAGGCCTGCTAACACTACTCTGCGCCTGCTTCCTTTCTATTTGTGTTGCTAATGATCAACAGCAGCACCAGACATGCAAGCCATCTTCATGCGGAGGTATTCGGAACATCACCTACCCTTTCCGATTGCAAGGTGACCCTTCAGGCTGTGGTGACCCAAAGTATGAATTGATTTGTGAGAACAATCTGACCGTGTTCAAGCAGGGCGGTAAGAAATACTTTGTGGCTGAGATCAACTACCACAACTATACCATTCGGATGCTGGATCCTGGCCAAAAGAAGGGAGACTGTTTCTCCACTCCTCTCTATTCCTCCTTCTCCATGCCGTCCTGTTGGTCCTTCTCGAATATGCTACATAATTTCGATCCATATCCAGATTATAAAGATCCATATTATTGCCCTGATGAATGGGAACGCAATACAATAGTTTTGTTGAGCTGTGAAAGGCCAATCAGTGATCAAAACTACATTCCCATTATTCTTTGCAACAGATCCGAAGACAACATTTCCTCTTCCTCACGGACATATGCTTATGTGCTAGCAGGAAAGTCTCTGGAGGCGGGACTTATTCGGGAATCATGCACCATCGCCTTGACTTTTGTTGCTCAATCAGAGCTCAGCAGTTATTCAATCTCAGATTTGCAAGAAAAGCTACTTATAGGGATTGAGCTTTCATTTTTGCATCGCCTCTGCATTTCAGAATGCAGTGTGAAAGGGCTAGCCTGCGATGTAGACTTCAATAATAATTCCATACGATGCTACAGATCAGGGAAATGCCTCTACTGGGGCACTTGGTGCTCGGACACAAACTGTTTTCTACTCGATCCGACTACCCTTCCATTTAAAGCATTGAAAGAAGGACTTGGCAATTATTGCGCTTACAATTATTATTGCAACATCAGCATGATTGTCATAGGAAGATTTGTGCCGGGGATATTGTGCCTATTTGCCTATTTAGTCTACAAGTTTCGACGAAGACATTTATCGTTCGATGATGATGTTGAAGAATTTTTACAGAGCCATAAAAATCTTCAGCTAGTCAAGTACTCATATTCAGATATAAAGAAGATGACTAACAAATTTAGTAATAAATTAGGACAAGGAGGCTTTGGCTTTGTATATAAAGGAAAACTTCAAAGCGGTCAAATTGTAGCGGTAAAAGTTTTGGTTATGCATAAAGCTAATGGACAAGATTTTATCAATGAAGTAGTCACCATTGGAAGGATTCACCATGTTAATATAGTGCGACTTGTTGGATTTTGTGCAGAGGGATTAAAATGGGCTTTGGTATATGAATATATGCCTAATGGGTCCCTTGATAAGTTTCTTTTTTCTAAACTTGAAAACAACATTCTTTTGAGTTGGGAAAGATTATATAAGATTGCACTTGGTGTGGGTCGTGGGATTGAATACTTACATCAAGGTTGTGACATGCAAATTCTGCATTTTGATATCAAGCCACACAACATTCTTCTTGATGCAAACTTTATCCCAAAAGTTTCTGATTTTGGCCTTACAAAATTACATTCAATAGAAGAAAGCATTGTGTCTCTAACTGCTGCTCGAGGAACATTAGGATATATTGCTCCAGAATTATTCTACAAGAACATTGGAGGTGTCTCATATAAAGCTGATGTGTATAGTTTTGGAATGTTATTAATGGAAATGGTGGGCAAAAGGAAGCATGCAAATACATGTCTAGAGCAAAGCCAAACATACTTCCCGTCATGGATTTATGATCGAATAGATCAAGGAGAAGACATGGAAATTGGAGATGCCACTGAGGACGAACACAAGTATATAAGGAAGATAGTCATAGTTGCATTATGGTGTGTACAGATGAATCCCACGGATCGTCCTTCAATGAGCAAGGCATTGGAGATGCTAGAAGGTGAAGTTGAACTCCTGCAAATGCCCCCCAGGCCTACTCTATACTCCAGGGAGATGTCAGTTGAGGATCATATGAACAATCCAGTCGGGGTACCAATTTCTTCACGACATGCGACAATGACGATCAGCTTGGAGGGAAGGTAG 2064 0.4075 MMLREAQVLEIGLLTLLCACFLSICVANDQQQHQTCKPSSCGGIRNITYPFRLQGDPSGCGDPKYELICENNLTVFKQGGKKYFVAEINYHNYTIRMLDPGQKKGDCFSTPLYSSFSMPSCWSFSNMLHNFDPYPDYKDPYYCPDEWERNTIVLLSCERPISDQNYIPIILCNRSEDNISSSSRTYAYVLAGKSLEAGLIRESCTIALTFVAQSELSSYSISDLQEKLLIGIELSFLHRLCISECSVKGLACDVDFNNNSIRCYRSGKCLYWGTWCSDTNCFLLDPTTLPFKALKEGLGNYCAYNYYCNISMIVIGRFVPGILCLFAYLVYKFRRRHLSFDDDVEEFLQSHKNLQLVKYSYSDIKKMTNKFSNKLGQGGFGFVYKGKLQSGQIVAVKVLVMHKANGQDFINEVVTIGRIHHVNIVRLVGFCAEGLKWALVYEYMPNGSLDKFLFSKLENNILLSWERLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDANFIPKVSDFGLTKLHSIEESIVSLTAARGTLGYIAPELFYKNIGGVSYKADVYSFGMLLMEMVGKRKHANTCLEQSQTYFPSWIYDRIDQGEDMEIGDATEDEHKYIRKIVIVALWCVQMNPTDRPSMSKALEMLEGEVELLQMPPRPTLYSREMSVEDHMNNPVGVPISSRHATMTISLEGR* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1173 687 FunFam serine/threonine-protein kinase PBS1-like 339 443 - -
Vvi16g1173 687 ProSiteProfiles Protein kinase domain profile. 369 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1173 687 Gene3D Transferase(Phosphotransferase) domain 1 444 647 - -
Vvi16g1173 687 PANTHER RUST RESISTANCE KINASE LR10-RELATED 341 658 IPR045874 GO:0004672
Vvi16g1173 687 SMART serkin_6 369 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1173 687 Pfam Wall-associated receptor kinase galacturonan-binding 36 99 IPR025287 GO:0030247
Vvi16g1173 687 SUPERFAMILY Protein kinase-like (PK-like) 349 640 IPR011009 -
Vvi16g1173 687 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Vvi16g1173 687 Pfam Protein kinase domain 372 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1173 687 FunFam PR5-like receptor kinase 444 650 - -
Vvi16g1173 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Vvi16g1173 687 Gene3D Phosphorylase Kinase; domain 1 337 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1173 Vvi-Chr16 20360992 20364402 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1173 11 658 Receptor kinase-like Gene Family AT5G38260 35.714 5.35e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1173 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1173 - - vvi:100247971 1387.09