Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1172 ATGACTACAGCTAGGGGGACCATGGGCGATATTGCTCCAGAGATGTTATCCAGGAATTTAGAGAATGTGTCTTACAAGTCAGATGTTTTTAGCTATGGAATGCTATTACTTGAAATGGTAGGAGGAAGGAAGAATATTGATGTTACTGCGGATAATACTAGTCCAGTTTACTTCCCAGGATGGATTTATAATCATCTAGATCAAGGTGAAGAGCTACAAATTCGAATTGATGAAGAAGGAGATACTCAAATAGTAAAAAAAAAATTGGCAATTATTGGACTTTGGTGTATTCAATGGTTCCCAGCAGATCATCCTTCTATGAAGCTTGTGGTTCAAATGTTAGAAGGAGAACATAATTTATCCACACCTCCCAATCCTTTCACTTGCACTGGTCCAACAAAAACGAATGCAAGCACATCTAAAAGATACCTTCAACAAGAGTTAACAGTTATCTCAGAAATTGAATGA 468 0.3718 MTTARGTMGDIAPEMLSRNLENVSYKSDVFSYGMLLLEMVGGRKNIDVTADNTSPVYFPGWIYNHLDQGEELQIRIDEEGDTQIVKKKLAIIGLWCIQWFPADHPSMKLVVQMLEGEHNLSTPPNPFTCTGPTKTNASTSKRYLQQELTVISEIE* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1172 155 Gene3D Transferase(Phosphotransferase) domain 1 1 129 - -
Vvi16g1172 155 SUPERFAMILY Protein kinase-like (PK-like) 1 138 IPR011009 -
Vvi16g1172 155 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1172 155 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 135 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1172 Vvi-Chr16 20330989 20331456 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1172 1 127 Receptor kinase-like Gene Family AT4G18250 45.926 4.04e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1172 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1172 - - vvi:100253347 290.426