Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1171 ATGTATAAGGGAAAGTTGTCTGATGAAGTTCATGTTGCAATCAAGATCCTAAACAACACCAATGGAAATGGGGAGGAGTTTCTTAATGAAGTGGGAACCATGGGTAGAATCCACCATGTCAATGTTGTTCGCTTAGCTGGCTTTTGTGCTGATGGATTTAGACGAGCTCTTATTTATGAGATCTTGCCAAATGAGTTGCTAGAGAAGTTCATATTTTCAAGAACAATTAAAAACCATTCCCTAGGTTGA 249 0.3855 MYKGKLSDEVHVAIKILNNTNGNGEEFLNEVGTMGRIHHVNVVRLAGFCADGFRRALIYEILPNELLEKFIFSRTIKNHSLG* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1171 82 Gene3D Phosphorylase Kinase; domain 1 1 62 - -
Vvi16g1171 82 ProSiteProfiles Protein kinase domain profile. 1 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1171 82 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 73 IPR045874 GO:0004672
Vvi16g1171 82 SUPERFAMILY Protein kinase-like (PK-like) 2 73 IPR011009 -
Vvi16g1171 82 Pfam Protein tyrosine and serine/threonine kinase 7 74 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1171 Vvi-Chr16 20330554 20330802 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1171 1 78 Receptor kinase-like Gene Family AT1G66980 55.128 3.65e-25 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1171 PK_Tyr_Ser-Thr 5.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1171 - - vvi:100253347 161.384