Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1170 ATGACTTATAATTTTAAGCATAAAGTAGGTCAAGGAGGTTTTGGTTCTGTGTACAAAGGAAAACTCCGAAGTGGCCGCATTGTAGCTATAAAAATGTTGGTTATGTCAAAGGCTAATGGGCAAGATTTTATCAATGAAGTTGCTACAATTGGAAGAATTCATCATGTTAATGTGGTGAGACTTGTTGGATTTTGCATACAAAGATCAAAATGGGCCCTTATATATGACTACATGCCCAATGGATCTCTTGATAAGTTTGTTTTTCTTGATCAAGGAAACAACATTCCTTTGAGTTGGGAAAGATTATACAAGATTGCACTTGGAGTAGGACGTGGGATCGAATACTTACATCAAGGGTGTGATATGCAAATTCTTCATTTTGATATCAAGCCACACAACATTCTTCTTGATAAAGACTTCACACCAAAAGTTTCAGATTTCGGTCTTGCAAAATTATACTCAACAGATGAAAGTATTGTATCAGTCACTGCTGCTAGAGGAACCTTGGGCTACATTGCTCCTGAATTGTTCTACAAAAACATTGGAGGTGTATCATTTAAGGCTGATGTTTATAGTTTTGGAATGTTGTTATTGGAAATGGTGGGAAAAAGGAAGAATGTGAATGCATTTGCAGAGCATTCAAGTCAAATATATTTCCCATCATGGATTTATGATAGATATGATCAAGCAGAGGACATGGAAATGGGAGATGCCACTGAGAATGAAAAAAAGTATGCAAGGAAAATGGTGATAGTTGCACTATGGTGTGTACAAATGAAGCCTGTGGATCGTCCTTCAATGAGCAAAACATTGGAGATGCTTGAAGAAGAGATTGAACTATTGAAAATGCCTCCTAAGCCAACTCTATGGTCTATCGAGAATCATGAGCAATCCATGGTAGAGGTACCAATTTCATCATCCAATTCCATGGGTACAATCAGCTTAAATGGAAGGTAG 957 0.372 MTYNFKHKVGQGGFGSVYKGKLRSGRIVAIKMLVMSKANGQDFINEVATIGRIHHVNVVRLVGFCIQRSKWALIYDYMPNGSLDKFVFLDQGNNIPLSWERLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDKDFTPKVSDFGLAKLYSTDESIVSVTAARGTLGYIAPELFYKNIGGVSFKADVYSFGMLLLEMVGKRKNVNAFAEHSSQIYFPSWIYDRYDQAEDMEMGDATENEKKYARKMVIVALWCVQMKPVDRPSMSKTLEMLEEEIELLKMPPKPTLWSIENHEQSMVEVPISSSNSMGTISLNGR* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1170 318 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 294 IPR045874 GO:0004672
Vvi16g1170 318 Gene3D Transferase(Phosphotransferase) domain 1 78 292 - -
Vvi16g1170 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi16g1170 318 ProSiteProfiles Protein kinase domain profile. 3 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1170 318 SMART serkin_6 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1170 318 PIRSF ILK 1 293 - -
Vvi16g1170 318 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Vvi16g1170 318 FunFam PR5-like receptor kinase 78 286 - -
Vvi16g1170 318 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vvi16g1170 318 SUPERFAMILY Protein kinase-like (PK-like) 3 275 IPR011009 -
Vvi16g1170 318 Pfam Protein kinase domain 3 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1170 Vvi-Chr16 20327686 20328642 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1170 1 293 Receptor kinase-like Gene Family AT5G38280 52.685 6.31e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1170 Pkinase 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1170 - - vvi:109124238 632.484