Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1169 ATGGATCGATATCTCTGTTCGTTTTTGTTCTTGTTTCTGACCTTGTTTGTGGAGATGAGAGGGGGCCGAGATGAGTGCATGACATCGAATGGTTGTGGCGACCAGGGTCCACTCATCCAGTTCCCTTTCCGTCTAAAACACCAGCCACACCACTGTGGATATCCGGGATTTGAGTTATCTTGCACTGAGAATAATCAGACCATGCTAGACCTGCGAGGTTCGGTAAAGCTCTTGGTGAAGAATATAACTTACAAATCCCGGGAAATCTTTGTCCAGGACCCGGATAATTGCCTTGCGAGACAGCTTCGAAACCTCAATTTAGCTGCCTCCCCCTTCCTCTTCAAATTTGAACAGGACTTCACCTTGTTCAATTGTTCCTCAAATAAAACAGATTCAGATAATTTTGATCAGTCCATCCCTTGCCTTTCTATCCCTGGTAACCCAGTTTATGCTGTTTATTCCAACGGACTTGTCCAAGATACGGATCTATCCTCTTGCCGCAGGCTTTACAACGCTTCAGTTCCATTTGATGGGGATTATACATTCGATGGAAGTGCGTTTTCTTTAAAGTGGTCAAATTCAAAAATATGCAGATTGAAGAAGAGTAATAGCACAGAAACTGAATGTATTAAAGGTGTATCGAAGAAAATAATTGTGACAGGTGCAATCTTTGGTTTCTTTCTTCTCGTGTTAGTAATTGTTATGCCTTATCGTGTCTATAGCTCAAATAAAGTAGAAAGAGATAATAGAGTAAAGGTTAAAAAGTTTCTAGAAGACTATGAAGCTCTCAAGCCCTCAAGATACTCCTATGCTGATATTAAAAGGATTACGAGTCAATTCAAAGATAAATTAGGGGAAGGAGGATATGGAACCGTGTACAAAGGAAAGCTTTCAGATGAAGTTTTTGTTGCAGTAAAAATCCTTAACAATTCTCAAGGAAATGGGGAAGAGTTCATTAATGAAGTAGCAACAATGGGTACAATCCACCATGTTAATATAGTTCGTTTAGTTGGATTTTGTGCTGATAGATTGAATCGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTGGAGAAGTTCATATTTTCAAAAGTTGTCAAGAACTATTCACTTAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCAAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAAAGAATCCTTCATTTTGATATCAAACCTCATAATATTTTACTTGACCACAACTTTAATCCAAAGATTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCAATCTCTATGACAATTGTAAGGGGAACAATGGGCTATATCGCTCCAGAAGTGTTATCTAGGAATTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGAAGGAAGAACATTGATGTTACTGTGGAGAGTACTAGCCAAGTATATTTCCCAGAATGGATTTATAATCATTTGGATATAGGGGAAGAATTGCATATTCGAATTGAAGAAGAAGGAGATGTTGAGATTGCAAAGAAATTAGCAATTGTGGGACTTTCATGTATTCAGTGGTGTCCAGTGGATCGTCCTTCCATGAAAATTGTGGTTCAAATGTTGGAAGGAGAAGGAGACAAGTTAACCATGCCTCCTAACCCTTTTGCTTCAACAGTTCCAACAAACTTGAGCAAGCCAGGGTAA 1728 0.3843 MDRYLCSFLFLFLTLFVEMRGGRDECMTSNGCGDQGPLIQFPFRLKHQPHHCGYPGFELSCTENNQTMLDLRGSVKLLVKNITYKSREIFVQDPDNCLARQLRNLNLAASPFLFKFEQDFTLFNCSSNKTDSDNFDQSIPCLSIPGNPVYAVYSNGLVQDTDLSSCRRLYNASVPFDGDYTFDGSAFSLKWSNSKICRLKKSNSTETECIKGVSKKIIVTGAIFGFFLLVLVIVMPYRVYSSNKVERDNRVKVKKFLEDYEALKPSRYSYADIKRITSQFKDKLGEGGYGTVYKGKLSDEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNIVRLVGFCADRLNRALIYEYLPNESLEKFIFSKVVKNYSLSWKKLQEIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAISMTIVRGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVTVESTSQVYFPEWIYNHLDIGEELHIRIEEEGDVEIAKKLAIVGLSCIQWCPVDRPSMKIVVQMLEGEGDKLTMPPNPFASTVPTNLSKPG* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1169 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Vvi16g1169 575 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vvi16g1169 575 FunFam serine/threonine-protein kinase PBS1-like 245 352 - -
Vvi16g1169 575 FunFam PR5-like receptor kinase 353 560 - -
Vvi16g1169 575 Pfam Protein kinase domain 280 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1169 575 Gene3D Phosphorylase Kinase; domain 1 248 352 - -
Vvi16g1169 575 SMART serkin_6 278 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1169 575 PANTHER RUST RESISTANCE KINASE LR10-RELATED 250 563 IPR045874 GO:0004672
Vvi16g1169 575 SUPERFAMILY Protein kinase-like (PK-like) 263 550 IPR011009 -
Vvi16g1169 575 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Vvi16g1169 575 Gene3D Transferase(Phosphotransferase) domain 1 353 558 - -
Vvi16g1169 575 ProSiteProfiles Protein kinase domain profile. 278 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1169 Vvi-Chr16 20320617 20324855 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1169 216 569 Receptor kinase-like Gene Family AT1G66910 49.311 1.00e-109 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1169 Pkinase 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1169 - - vvi:100245376 1145.95