Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1167 ATGAGTGCGTACCGATCTGACTACATAATCTTCAGTTGTTCAGAGAGCAAAGCAGATCCATATAAAAATCTTAATCCCACCCATTGCGGTTTTCTTCCCAATAACCTAGTTTACGGTGTGAGTCCCGAGGCTAGTCTCAGTCACTTGGACTTATCCTCGTGCTCCATGATCTACTATTTTTCAATCCCATCTTGGTCTGTAGACCTTGGGGACTATAGTGAATATAATGTTGTCATGAATTGGTCAAGACCATCGTGTGGAGACTGCGAAGCAAAAGGAAAGAGATGCAGATTGCAGGAGAGTAATATCAAGGAACCTGAAATCGAATGTGTGGATCAACCACCAAAAGATGTATCAAAAGAGTGGACGATTACAGTAGTCATTATTTGCTATAATGTCTATACCACTGATAAATCAAAAAAAGAGCACAGCAAAAAGCTTCAAAAGTTTTTGGAAGATTATAGAGCTCTCAACCCATCAAGGTACTCCTATGCCGATATTAAGAAGATAACAAATCTGTTCAAGGACAAATTGGGTGAAGGAGGTTATGGAACCATTTATAAAGGAAAACTTTCAAATGAAGTTTTTGTTGCAGTAAAAATCCTTAACGATTCCAAAAAAAATGGTGAAGAGTTTATTAATGAAGTAAGAACAATGGGTAGAATCCATCACATTAATGTGGTTCGCTTAGTTGGATTTTGTGCTGATGGTTATAAACGAGCTTTGATTTATGAATTCTTACCAAATGAGTCTCTCGAGAAGTTTATATTTAAGAACCAATCACTTGGTTGGCAAAAGCTTCATGATATCGCTCTAGGTATAGCTAAAGGAATTGAATATCTTCACCAAGGTTGTGATCAACGAATCCTTCATTTTGATATTAAACCTCATAATATTTTGCTAGACCAAAATTTTAACCCCAAAATCTCTGATTTTGGTTTAGCAAAATTATGTTCTAAGGAACAAAGTGTTGTTTCTATGACAGCAGCAAGGGGGACCATGGGCTATATTGCACCAGAAGTGTTGTCTAGGAATTTTGGAAATGTATCCTATAAATCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTAGGAGGAAGGAAGAATAGTGATGCTATAATGGAGAACACTAGCCAAATGTATTTTCCAGAATGA 1161 0.3652 MSAYRSDYIIFSCSESKADPYKNLNPTHCGFLPNNLVYGVSPEASLSHLDLSSCSMIYYFSIPSWSVDLGDYSEYNVVMNWSRPSCGDCEAKGKRCRLQESNIKEPEIECVDQPPKDVSKEWTITVVIICYNVYTTDKSKKEHSKKLQKFLEDYRALNPSRYSYADIKKITNLFKDKLGEGGYGTIYKGKLSNEVFVAVKILNDSKKNGEEFINEVRTMGRIHHINVVRLVGFCADGYKRALIYEFLPNESLEKFIFKNQSLGWQKLHDIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDQNFNPKISDFGLAKLCSKEQSVVSMTAARGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNSDAIMENTSQMYFPE* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1167 386 ProSiteProfiles Protein kinase domain profile. 172 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1167 386 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Vvi16g1167 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Vvi16g1167 386 PANTHER RUST RESISTANCE KINASE LR10-RELATED 144 386 IPR045874 GO:0004672
Vvi16g1167 386 SMART serkin_6 172 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1167 386 SUPERFAMILY Protein kinase-like (PK-like) 155 375 IPR011009 -
Vvi16g1167 386 Gene3D Transferase(Phosphotransferase) domain 1 247 385 - -
Vvi16g1167 386 FunFam Os07g0541700 protein 247 333 - -
Vvi16g1167 386 Pfam Protein kinase domain 175 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1167 386 Gene3D Phosphorylase Kinase; domain 1 143 246 - -
Vvi16g1167 386 FunFam serine/threonine-protein kinase PBS1-like 138 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1167 Vvi-Chr16 20283584 20286492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1167 140 386 Receptor kinase-like Gene Family AT1G66980 56.522 8.09e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1167 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1167 - - vvi:100264416 776.163