Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1166 ATGTTGAGGGAGGCGCAAGTTTTGGAAATAGGCCTGCTAACACTACTCTGCGCCTGCTTCCTTTCTATTTGTGTTGCTAATGATCAACAGCAGCACCAGACATGCAAGCCATCTTCATGCGGAGGTATTCGGAACATCACCTACCCTTTCCGATTGCAAGGTGACCCGTCAGGCTGTGGTGACCCAAAGTATGAATTGATTTGTGAGAACAATCTGACCGTGTTCAAGCAGGGCGGTAAGAAATACTTTGTGGCTGAGATCAACTACCACAACTATACCATTCGGATGCTGGATCCTGGCCAAAAGAAGGGAGACTGTTTCTCCACTCCTCTCTATTCCTCCTTCTCCATGCCGTCCTGTTGGTCCTTCTCGAATATGCTACATAATTTCGATCCATATCCAGATTATAAAGATCCATATTATTGCCCTGATGAATGGGAACACAATACAATAGTTTTGTTGAGCTGTGAAAGGCCAATCAGTGATCAAAACTACATTCCCATTATTCTTTGCAACAGATCCGAAGACAACATTTCCTCTTCCTCACGGACATATGCTTATGTGCTAGCAGGAAAGTCTCTGGAGGCGGGACTTATTCGGGAATCATGCACCATCGCCTTGACTTTTGTTGCTCAATCAGAACTCAGCAGTTATTCAATCTCAGATTTGCAAGAAAAGCTACTTATGGGGATGGAGCTTTCATTTTTGCATCGCCTCTGCATTACAGAATGCAGTGTGAAAGGGCTAGCCTGCGATGTAGACTTCAATAATAATTCCATACGATGCTACAGATCAGGGAAATGCCTCTACTGGGGCACTTGGTGCTCGGACACAAACTTCATAGGAAGATTTGTGCCGGGGATATTGTGCCTATTTGCCTATTTAGTCTACAAGTTTCGACGAAGACATTTATCGTTCGATGATGATGTTGAAGAATTTTTACAGAGCCATAAAAATCTTCAGCTAGTCAAGTACTCATATTCAGATATAAAGAAGATGACTAACAAATTTAGTAATAAATTAGGACAAGGAGGCTTTGGCTTTGTATATAAAGGAAAACTTCAAAGCGGTCAAATTGTAGCGGTAAAAGTTTTGGTTATGCATAAAGCTAATGGACAAGATTTTATCAATGAAGTAGCCACCATTGGAAGGATTCACCATGTTAATATAGTGCGACTTGTTGGATTTTGTGCAGAAGGATTAAAATGGGCTCTGGTATATGAATATATGCCTAATGGGTCCCTTGATAAGTTTCTTTTTTCTAAACTTGAAAACAACATTCTTTTGAGTTGGGAAAGATTATATAAGATTGCACTTGGTGTGGGTCGTGGGATTGAATACTTACATCAAGGTTGTGACATGCAAATTCTGCATTTTGATATCAAGCCACACAACATTCTTCTTGATGCAAACTTTATCCCAAAAGTTTCTGATTTTGGCCTTGCAAAATTACATTCAATAGAAGAAAGCATTGTGTCTCTAACTGCTGCTCGAGGAACATTAGGATATATTGCTCCAGAATTATTCTACAAGAACATTGGAGGTGTTTCATATAAAGCTGATGTGTATAGTTTTGGAATGTTATTAATGGAAATGGTGGGAAAAAGGAAGCATGCAAATACATGTCTAGAGCAAAGCCAAACATACTTCCCGTCATGGATTTATGATCGAATAGATCAAGGAGAAGACATGGAAATTGGAGATGCCACTGAGGACGAACACAAGTATATAAGGAAGATAGTCATAGTTGCATTATGGTGTGTACAGATGAATCCCACGGATCGCCCTTCAATGAGCAAGGCATTGGAGATGCTAGAAGGTGAAGTTGAACTCCTGCAAATGCCCCCCAGGCCTACTCTATACTCCAGGGAGATGTCAGTTGAGGATCATATGAACAATCCAGTTGGGGTACCAATTTCTTCACGAAATGCGACAATGACGATCAGCTTGGAGGGAAGGTAG 1962 0.4093 MLREAQVLEIGLLTLLCACFLSICVANDQQQHQTCKPSSCGGIRNITYPFRLQGDPSGCGDPKYELICENNLTVFKQGGKKYFVAEINYHNYTIRMLDPGQKKGDCFSTPLYSSFSMPSCWSFSNMLHNFDPYPDYKDPYYCPDEWEHNTIVLLSCERPISDQNYIPIILCNRSEDNISSSSRTYAYVLAGKSLEAGLIRESCTIALTFVAQSELSSYSISDLQEKLLMGMELSFLHRLCITECSVKGLACDVDFNNNSIRCYRSGKCLYWGTWCSDTNFIGRFVPGILCLFAYLVYKFRRRHLSFDDDVEEFLQSHKNLQLVKYSYSDIKKMTNKFSNKLGQGGFGFVYKGKLQSGQIVAVKVLVMHKANGQDFINEVATIGRIHHVNIVRLVGFCAEGLKWALVYEYMPNGSLDKFLFSKLENNILLSWERLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDANFIPKVSDFGLAKLHSIEESIVSLTAARGTLGYIAPELFYKNIGGVSYKADVYSFGMLLMEMVGKRKHANTCLEQSQTYFPSWIYDRIDQGEDMEIGDATEDEHKYIRKIVIVALWCVQMNPTDRPSMSKALEMLEGEVELLQMPPRPTLYSREMSVEDHMNNPVGVPISSRNATMTISLEGR* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1166 653 Gene3D Transferase(Phosphotransferase) domain 1 410 613 - -
Vvi16g1166 653 ProSiteProfiles Protein kinase domain profile. 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1166 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vvi16g1166 653 PANTHER RUST RESISTANCE KINASE LR10-RELATED 307 624 IPR045874 GO:0004672
Vvi16g1166 653 Gene3D Phosphorylase Kinase; domain 1 307 409 - -
Vvi16g1166 653 FunFam S-receptor-like serine/threonine-protein kinase 306 409 - -
Vvi16g1166 653 SUPERFAMILY Protein kinase-like (PK-like) 315 606 IPR011009 -
Vvi16g1166 653 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Vvi16g1166 653 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
Vvi16g1166 653 SMART serkin_6 335 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1166 653 FunFam PR5-like receptor kinase 410 616 - -
Vvi16g1166 653 Pfam Protein kinase domain 338 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1166 Vvi-Chr16 20274105 20277550 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1166 10 624 Receptor kinase-like Gene Family AT5G38260 37.014 6.38e-115 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1166 Pkinase 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1166 - - vvi:100854552 1291.56