Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1163 ATGATGCTCAGAGAAACAAAAGTTGTGGCATTAACAGTCTTCCACACTTTCTTGCTTGCAATTTGTGCTGCTAATGGAAACCAGACATGCAGGCCTTCTTCTTGTGGAGATATTCAAAAAATTAGCAACCCTTTCCGATTGAAAGGTGATCCGTCTGGGTGTGGTGATCCTGACTATGAATTGGTCTGCGAAAACAATCGTACTATGGTAAACCTGGAGCATGGGAAATACTATGTTGCCGATATCAACTACGATAACTACACCATTCGGGTAGTGGATCCAGGGGTGGAAAAGGGCAACTGTTTCTCCGCTCCTCTGTATTCCTTGACAAGAGAAATATTCCGTTCGGATAAGAGAGCATATTTTTTGAATCCGCATGAAGCGACCAATACCACGGTTTTGATGAACTGCGAGCAGCCAATAAGTGATGGCAACTATATTCCTATCACTCCTTGCAACAGAAGCAATGTGACTTCATCTTCCTCACAAGCATATGTTTATGCACTAGTCGGCGGAGGAGACTCCCTACTGGTGAATGATATTAAGTATTCATGCACCATTAGCAGGACTATTATTACTCAATTCTTGAAGCCCGGCAATCTTTCAATGTCAGATTTGCAAGAAATACTTCTTCAGGGGCTCGATATTTCATTCTTGCTCTTCCGTTGCAAAAGCGAATGCCATATGAAAGGGCCATACTGCGATCTAGATTGGACCAAAAATACTGTAAAATATCGAAGCACCTTTTCAAGCAACGGTGTGAGAGAAAGATACAACTACTGCTACCACTATGAAACTGCACTTTACCTTGGCATGATCATCATCGGGAGGGCCATACCTGGTATTTTGTGTTTGCTTGTCTATTTAATCTACAAGTTTCGACGAAGACACTTATCATTGGATGATGGTATTGAAGAATTTCTACATAGCCATAAAAATCTTCAGCGAATCAAATACTCATATTCGGAGCTAAAAAAGATGACTCATAATTTTAAGAATAAATTAGGTCAAGGAGGTTTTGACTCTGTGTACAAAGGAAAACTCCAAAGTGGTCGCATTGTAGCTGTAAAAATGTTAGTTATGTCAAAAGCTAATGGGCAAGATTTCATCAATGAAGTTGCTACAATCGGAAGGATTCATCATGTTAATGTTGTGAGACTTGTTGGATTTTGTATACAGAGATCAAAATGGGCTCTTGTATATGACTTCATGCCGAATGGGTCTCTTGATAAGTTTGTTTTTCTTGACCAAGGAAACAACATTCCCTTGATTTGGGAAAGATTATACAAGATTGCACTTGGAGTGGGACGTGGGATTGAATACTTACATCAGGGATGTGACATGCAAATTCTCCATTTTGATATCAAGCCACACAACATTCTTCTTGATGAAGACTTCACACCAAAAGTTTCAAATTTTGGTCTTGCCAAATTATATTCAACAAATGATAGTATTGTATCCATCACTGCTGCTAGAGGAACCTTGGGCTACATTGCTCCTAAATTGTTCTACAAAAACATTGGAGGTGTATCATTTAAGGCTGATGTTTATAGTTTTGGAATGTTGTTATTGGAAATGGTAGGGAAAAGGAAGAATGTTAACACATTTGCAGAACATTCAAGTCAAATGTATTTCACATCATGGATTTATAATAGATATGATCAAGAAGAGGACATGAAAATGGGAGATGCCACTGAGGATGAAAAAAGGTATGTAAGGAAAATGGTGATAGTTGCACTATGGTGTATACAAATGAAGCCTATAGATCGTCCTTCAATGAGCCAAGCATTGGAGATGCTTGAAGGAGAGGTTGAACTCTCGAAAATGCCTCCTAAGCCAACTCTATGGTCTATTGATAATCATGAGCAATTCATGGTAGAGGCATCAACTTCATAA 1896 0.3898 MMLRETKVVALTVFHTFLLAICAANGNQTCRPSSCGDIQKISNPFRLKGDPSGCGDPDYELVCENNRTMVNLEHGKYYVADINYDNYTIRVVDPGVEKGNCFSAPLYSLTREIFRSDKRAYFLNPHEATNTTVLMNCEQPISDGNYIPITPCNRSNVTSSSSQAYVYALVGGGDSLLVNDIKYSCTISRTIITQFLKPGNLSMSDLQEILLQGLDISFLLFRCKSECHMKGPYCDLDWTKNTVKYRSTFSSNGVRERYNYCYHYETALYLGMIIIGRAIPGILCLLVYLIYKFRRRHLSLDDGIEEFLHSHKNLQRIKYSYSELKKMTHNFKNKLGQGGFDSVYKGKLQSGRIVAVKMLVMSKANGQDFINEVATIGRIHHVNVVRLVGFCIQRSKWALVYDFMPNGSLDKFVFLDQGNNIPLIWERLYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDEDFTPKVSNFGLAKLYSTNDSIVSITAARGTLGYIAPKLFYKNIGGVSFKADVYSFGMLLLEMVGKRKNVNTFAEHSSQMYFTSWIYNRYDQEEDMKMGDATEDEKRYVRKMVIVALWCIQMKPIDRPSMSQALEMLEGEVELSKMPPKPTLWSIDNHEQFMVEASTS* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1163 631 Gene3D Transferase(Phosphotransferase) domain 1 404 610 - -
Vvi16g1163 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Vvi16g1163 631 SMART serkin_6 329 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1163 631 FunFam serine/threonine-protein kinase PBS1-like 301 403 - -
Vvi16g1163 631 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vvi16g1163 631 ProSiteProfiles Protein kinase domain profile. 329 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1163 631 Gene3D Phosphorylase Kinase; domain 1 304 403 - -
Vvi16g1163 631 SUPERFAMILY Protein kinase-like (PK-like) 309 601 IPR011009 -
Vvi16g1163 631 Pfam Protein kinase domain 331 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1163 631 FunFam PR5-like receptor kinase 404 611 - -
Vvi16g1163 631 PANTHER RUST RESISTANCE KINASE LR10-RELATED 302 618 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1163 Vvi-Chr16 20226516 20230072 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1163 1 615 Receptor kinase-like Gene Family AT5G38260 35.681 4.45e-107 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1163 Pkinase 5.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1163 - - vvi:100248236 1234.55