Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1162 ATGAGAGGGGGCCGAGGTGAGTGCCCGACATCAAATCGTTGTGGCGACCAGGGTCCACTCATCCAGTTCCCTTTCCGTCTAAAAGGCCAGCCACACCACTGTGGATACCCGAGATTTGTTTTATCTTGCACTGAGAATAATCAGATCATGCTGGAGCTGCCAGATTCGGTAAAGCTCTTGGTGAAGAATATAATCTACAAATCCAGGGAAATCATTGTCCAGAACCCTGATAATTGCCTTGAGAGACAGCTTCGAAACCTTAGTTTAGCTTCGTCCCCCTTCCAGTTCAAATTTGAGGGGGACGTCACCTTCTTCAATTGTTCCTCACTTAAAACGGCAGAATCATTTGCTGCTCACTTCAGTTCAAATCTAAAACGGCAGAATCATTTGTTCCGAAATCAATATGTGGAAGCTGCCTACGAGGAGGACACATATGCAGACTGA 444 0.4617 MRGGRGECPTSNRCGDQGPLIQFPFRLKGQPHHCGYPRFVLSCTENNQIMLELPDSVKLLVKNIIYKSREIIVQNPDNCLERQLRNLSLASSPFQFKFEGDVTFFNCSSLKTAESFAAHFSSNLKRQNHLFRNQYVEAAYEEDTYAD* 148
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1162 147 Pfam Wall-associated receptor kinase galacturonan-binding 8 73 IPR025287 GO:0030247
Vvi16g1162 147 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 116 IPR046948 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi16g1162 Vvi-Chr16 20224399 20224842 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1162 10 107 C3H Transcription Factor Family AT2G46495 37.374 9.35e-16 70.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1162 - K00103 vvi:104882232 308.145