Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1161 ATGGTAACAGGCACAATCTTTGGTTTCTTTCTACTTGTGTTAGTAATTGCTATGTTTTATCGTCTCTATAGCTCAGATAAATTAGAAAGAGAGAATGGAATAAAGGTTAAAAGGTTTCTGGAAGACTATGAAGCTCTCAAGCCCTCAAGATACTCCTATGCTGATATTAAAAGGATTACAAATCAATTCAAAGATAAATTAGGCCAAGGAGGTTATGGAACCGTGTACAAGGGAAAGCTTTCACATGAAGTTTTTGTTGCAGTAAAAATCCTTAATAATTCTCAAGGAAATGGAGAAGAGTTCATTAATGAAGTGGCAACGATGGGTACAATCCACCATGTTAATATAGTTCGCTTAGTCGGATTTTGTGCTGATGGATTTAAACGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTAGAGAAGTTCATATTTTCAAGAGATGTTAAGAACTATTCACTCAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCGAAAGGAATTGAGTATCTTCATCAAGGTTGTGATAAAAGAATCCTCCATTTTGATATCAAACCTCATAATATTTTACTTGATCACAACTTTAATCCAAAGGTTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCGGTCTCTATGACCATTGCAAGGGGAACAATAGGCTACATTGCTCCAGAAGTGTTGTCTAGGAATCTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGGAGGAAGAATATTGATGTTAATGTGGAGAGTACTAGCCAAGTATACTTCTCATAA 837 0.3536 MVTGTIFGFFLLVLVIAMFYRLYSSDKLERENGIKVKRFLEDYEALKPSRYSYADIKRITNQFKDKLGQGGYGTVYKGKLSHEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNIVRLVGFCADGFKRALIYEYLPNESLEKFIFSRDVKNYSLSWKKLQEIAIGIAKGIEYLHQGCDKRILHFDIKPHNILLDHNFNPKVSDFGLAKLCSKEQSAVSMTIARGTIGYIAPEVLSRNLGNVSYKSDVYSFGMLLLEMVGGRKNIDVNVESTSQVYFS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1161 278 PANTHER RUST RESISTANCE KINASE LR10-RELATED 35 277 IPR045874 GO:0004672
Vvi16g1161 278 FunFam Os07g0541700 protein 136 226 - -
Vvi16g1161 278 FunFam serine/threonine-protein kinase PBS1-like 29 135 - -
Vvi16g1161 278 SMART serkin_6 61 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1161 278 Gene3D Transferase(Phosphotransferase) domain 1 136 276 - -
Vvi16g1161 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Vvi16g1161 278 ProSiteProfiles Protein kinase domain profile. 61 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1161 278 Gene3D Phosphorylase Kinase; domain 1 33 135 - -
Vvi16g1161 278 Pfam Protein kinase domain 63 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1161 278 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Vvi16g1161 278 SUPERFAMILY Protein kinase-like (PK-like) 46 266 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1161 Vvi-Chr16 20221949 20222897 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1161 21 262 Receptor kinase-like Gene Family AT1G66910 54.733 1.55e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1161 Pkinase 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1161 - - vvi:100854328 548.895