Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1160 ATGACTCATAATTTTAAGAATAAATTAGGTGAAGGAGGTTTTGGCTTTGTGTACAAAGGAAAACTCCGAAGTGGTCACATTGTAGCTGTAAAAATGTTAGTTATGTCAAAAGCTAATGGGCAAGATTTCATCAATGAAGTTGCTACAATTGGAAGAATCCATCATGTTAATGTGGTGGGACTTGTTGGATTTTGTATACAAGGATCAAAATGGGCTCTCGTATATGACTTCATGCCGAATGAGTCTCTTGATAAGTTTGTTTTTCTTGACCAAGGAAATAACATTCCTTTGAATTGGGAAAGATTATACAAAATTGCACTTGGAGTGGCGAGTGGGATTGAACACTTACATCAAGGATGTGATATGCAAATTCTCCATTTTGATATCAAGCCACACGACATTCTTCTTAATGAAGATTTTACACCAAAAGTTTCAGATTTTGGCCTTGCAAAATTACATTCAACAGATGAAAGTATTGTGTCTCTCACTGCTGCTAGAGGAACATTGGGATATATAGCTCCAGAGTTGTTCTATAAAAATATTGGAGGAGTTTCATATAAAGCTAATATTTATAGTTTTGGAATGCTATTGTTAGAAATTGTGGGGAGAAGGAAGAATGTGAATGCATTTGCAGAGCATTCAAGTCAAATATACTTTCCATCATGGATTTATGATCGATATGATCAAGGAGAGGACATAGAAATAGGACAGGCCACTAAGGATGAAAAAAATACTTTAGACTTGATCCACATAGATATATGTGGTCCCATGACACCAACTGCTTTAGGAGGGAGAAGAAAGAATGTGAATGCAAATGCAAAGCACTCGAGTCAAATATATTTCCCATCATGGATTTACCTCAGATATGATCAAGGAGAGAATATAGACTTGGAAGATGCCATTGAAGATGAAAAGAGGTTTGTAAAGAAAATGGTTATAGTTGCATTATGGTGTATACAGATGAAGCCGATAGACCGCCCTTCAATGAGCAAAGCCTTAGAGATGTTGGAAGGAAAGGTTGAATTGTTAGAAATGTCTCCTAAGTCTACTCTATACTATGAAGAAATGTCAATTGAGGATCATATCAACAATCCAATAGGAGCATCAATTTCCTGGCACAATTCCATGGATAAGTAG 1137 0.3606 MTHNFKNKLGEGGFGFVYKGKLRSGHIVAVKMLVMSKANGQDFINEVATIGRIHHVNVVGLVGFCIQGSKWALVYDFMPNESLDKFVFLDQGNNIPLNWERLYKIALGVASGIEHLHQGCDMQILHFDIKPHDILLNEDFTPKVSDFGLAKLHSTDESIVSLTAARGTLGYIAPELFYKNIGGVSYKANIYSFGMLLLEIVGRRKNVNAFAEHSSQIYFPSWIYDRYDQGEDIEIGQATKDEKNTLDLIHIDICGPMTPTALGGRRKNVNANAKHSSQIYFPSWIYLRYDQGENIDLEDAIEDEKRFVKKMVIVALWCIQMKPIDRPSMSKALEMLEGKVELLEMSPKSTLYYEEMSIEDHINNPIGASISWHNSMDK* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1160 378 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Vvi16g1160 378 Pfam Protein kinase domain 5 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1160 378 SUPERFAMILY Protein kinase-like (PK-like) 5 337 IPR011009 -
Vvi16g1160 378 ProSiteProfiles Protein kinase domain profile. 3 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g1160 378 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vvi16g1160 378 PANTHER RUST RESISTANCE KINASE LR10-RELATED 264 355 IPR045874 GO:0004672
Vvi16g1160 378 Gene3D Transferase(Phosphotransferase) domain 1 78 349 - -
Vvi16g1160 378 FunFam Os07g0541700 protein 78 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1160 Vvi-Chr16 20178448 20217656 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1160 1 351 Receptor kinase-like Gene Family AT1G66980 42.210 7.74e-89 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g1160 Pkinase 7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1160 - - vvi:100854553 458.759